# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s4iA	175	3.891		
1xtmA	175	4.828		
3ddjA	296	9.732		
1x6oA	174	11.79	b.34.5.2,b.40.4.5	109493,109494
3cbnA	151	12.21		
2fafA	608	13.63		
1o7jA	327	14.69	c.88.1.1	81140
1khbA	625	15.14	c.91.1.1,c.109.1.1	68606,68607
1tovA	98	18.37	b.34.10.1	107179
1fzyA	149	19.11	d.20.1.1	65072
1z9nA	177	19.32		
1bkb	136	21.27		
2awfA	172	23.29	d.20.1.1	127432
1khiA	176	24.51	b.34.5.2,b.40.4.5	77408,77409
2aqpA	164	27.51		
1ii2A	524	28.94	c.91.1.1,c.109.1.1	66146,66147
2glzA	153	30.52	d.81.3.1	135348
1eejA	216	35.24	c.47.1.9,d.17.3.1	33057,38071
1x3cA	73	37.95	g.37.1.1	121660
3c3pA	210	37.98		
1oohA	126	38.84	a.39.2.1	93383
4pgaA	337	39.10	c.88.1.1	35565
1gyhA	318	39.52	b.67.2.1	70757
2b5nA	323	39.66		
1uv4A	293	40.71	b.67.2.1	119705
2c36A	285	41.01		
1zuoA	186	45.18	d.20.1.1	125680
2d4qA	257	45.35		
2j5bA	348	47.61		
3c3bA	420	48.96		
1pzsA	208	51.48	b.1.8.1	104397
1z2uA	150	52.45	d.20.1.1	124389
1qfjA	232	52.52	b.43.4.2,c.25.1.1	25655,31545
2vqeI	128	53.16		
1jmxA	494	55.51	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
2pqvA	154	55.81		
1esoA	154	58.37	b.1.8.1	22293
2c5qA	240	58.43		
1nnsA	326	58.66	c.88.1.1	85910
2gjdA	157	61.10		
2a4dA	160	62.32	d.20.1.1	126152
1bw3A	125	63.26	b.52.1.2	26899
1xfsA	178	63.78	d.129.3.5	109589
1up9A	107	67.16	a.138.1.1	113390
1vpvA	300	68.06	c.119.1.1	113975
2owlA	303	70.84		
1f1gA	154	72.13	b.1.8.1	76153
1ayl	541	72.58		
1jatA	155	72.73	d.20.1.1	62818
1vqoT	120	72.90	b.34.5.1	120381
2i00A	406	74.46		
3bt7A	369	78.94		
1z6rA	406	79.35	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
2qf2A	624	80.39		
1q46A	175	81.55	a.60.14.1,b.40.4.5	111594,111595
2q8uA	336	83.06		
3bzhA	194	83.76		
1y42X	392	84.10		
1u9aA	160	84.26	d.20.1.1	38333
1senA	164	84.66	c.47.1.1	105465
1earA	147	85.16	b.107.1.1,d.58.38.1	64875,64876
1wzvA	155	86.54	d.20.1.1	121529
2bzgA	232	86.93	c.66.1.36	129559
1a53	247	87.37		
1svdM	110	88.53	d.73.1.1	119059
1g7sA	594	89.14	b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8	25712,25713,31032,32147