# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1o7jA	327	9.414	c.88.1.1	81140
3ddjA	296	11.06		
3cbnA	151	11.85		
1s4iA	175	12.09		
1xtmA	175	14.96		
1x6oA	174	15.71	b.34.5.2,b.40.4.5	109493,109494
1fzyA	149	15.82	d.20.1.1	65072
1z9nA	177	16.86		
1bkb	136	17.01		
2aqpA	164	18.07		
2awfA	172	20.71	d.20.1.1	127432
1tovA	98	21.11	b.34.10.1	107179
1ii2A	524	21.56	c.91.1.1,c.109.1.1	66146,66147
4pgaA	337	24.46	c.88.1.1	35565
2c36A	285	24.93		
1khbA	625	30.60	c.91.1.1,c.109.1.1	68606,68607
2j5bA	348	33.85		
2fafA	608	36.59		
1esoA	154	37.31	b.1.8.1	22293
2gjdA	157	37.85		
1x3cA	73	39.12	g.37.1.1	121660
2glzA	153	39.59	d.81.3.1	135348
2vqeI	128	39.86		
1oohA	126	40.59	a.39.2.1	93383
1zuoA	186	42.24	d.20.1.1	125680
1eejA	216	42.52	c.47.1.9,d.17.3.1	33057,38071
3c3pA	210	42.67		
1z2uA	150	44.42	d.20.1.1	124389
1khiA	176	48.14	b.34.5.2,b.40.4.5	77408,77409
1y42X	392	48.79		
1z6rA	406	49.13	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
1vjgA	218	50.86	c.23.10.6	100810
3c3bA	420	51.72		
1nnsA	326	53.16	c.88.1.1	85910
1qfjA	232	53.26	b.43.4.2,c.25.1.1	25655,31545
1up9A	107	54.11	a.138.1.1	113390
2a4dA	160	54.95	d.20.1.1	126152
1uv4A	293	56.36	b.67.2.1	119705
1vqoT	120	56.96	b.34.5.1	120381
1vs1A	276	58.77		
1tca	317	60.46		
1wzvA	155	61.07	d.20.1.1	121529
2j00I	128	62.64	d.14.1.1	137847
1bw3A	125	63.02	b.52.1.2	26899
1jatA	155	63.96	d.20.1.1	62818
2uubI	128	64.71		
1i7kA	179	65.17	d.20.1.1	61889
2onuA	152	65.60		
2c5qA	240	65.66		
3bzhA	194	66.11		
1gyhA	318	66.55	b.67.2.1	70757
2r76A	152	67.12		
1senA	164	67.87	c.47.1.1	105465
1ayl	541	71.60		
1a53	247	72.04		
1u9aA	160	72.33	d.20.1.1	38333
2gb4A	252	73.99		
2q8uA	336	74.29		
2b5nA	323	75.12		
1earA	147	78.40	b.107.1.1,d.58.38.1	64875,64876
3bt7A	369	79.48		
1z9pA	155	85.15		
2bzgA	232	86.23	c.66.1.36	129559
2qxlA	658	86.99		
1jmxA	494	87.08	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905