# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1o7jA	327	7.797	c.88.1.1	81140
3ddjA	296	9.98		
3cbnA	151	10.41		
1x6oA	174	12.57	b.34.5.2,b.40.4.5	109493,109494
1s4iA	175	13.28		
1xtmA	175	15.23		
1z9nA	177	15.40		
1bkb	136	19.44		
2aqpA	164	19.74		
1fzyA	149	19.84	d.20.1.1	65072
1tovA	98	19.99	b.34.10.1	107179
4pgaA	337	20.56	c.88.1.1	35565
2awfA	172	24.97	d.20.1.1	127432
1khbA	625	27.41	c.91.1.1,c.109.1.1	68606,68607
1ii2A	524	27.69	c.91.1.1,c.109.1.1	66146,66147
2fafA	608	29.63		
2glzA	153	30.09	d.81.3.1	135348
2j5bA	348	30.69		
1x3cA	73	33.29	g.37.1.1	121660
2vqeI	128	34.23		
2c36A	285	36.02		
1esoA	154	39.15	b.1.8.1	22293
3c3pA	210	39.74		
2uubI	128	42.83		
1up9A	107	43.99	a.138.1.1	113390
3c3bA	420	46.49		
1khiA	176	46.91	b.34.5.2,b.40.4.5	77408,77409
1z2uA	150	48.13	d.20.1.1	124389
1nnsA	326	51.24	c.88.1.1	85910
1oohA	126	54.20	a.39.2.1	93383
2qxlA	658	55.35		
2gjdA	157	57.36		
1y42X	392	58.47		
2gb4A	252	59.24		
1a53	247	59.81		
1zuoA	186	60.80	d.20.1.1	125680
2bzgA	232	63.55	c.66.1.36	129559
2a4dA	160	63.60	d.20.1.1	126152
1z6rA	406	64.80	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
1jatA	155	64.84	d.20.1.1	62818
1qfjA	232	65.92	b.43.4.2,c.25.1.1	25655,31545
1vs1A	276	66.18		
3bt7A	369	66.32		
2j00I	128	68.53	d.14.1.1	137847
1eejA	216	68.74	c.47.1.9,d.17.3.1	33057,38071
1vqoT	120	70.58	b.34.5.1	120381
1xfsA	178	72.51	d.129.3.5	109589
2c5qA	240	72.98		
1tca	317	73.31		
3bzhA	194	76.08		
2q8uA	336	76.77		
1uv4A	293	77.08	b.67.2.1	119705
1gyhA	318	77.31	b.67.2.1	70757
2qtcA	886	77.67		
2qf2A	624	77.76		
1q46A	175	78.51	a.60.14.1,b.40.4.5	111594,111595
1wzvA	155	79.57	d.20.1.1	121529
1i7kA	179	80.68	d.20.1.1	61889
1bw3A	125	83.79	b.52.1.2	26899
1jnrA	643	85.84	a.7.3.1,c.3.1.4,d.168.1.1	66966,66967,66968
2z0jA	237	87.35		
2d4qA	257	87.41		
1vjgA	218	87.97	c.23.10.6	100810
1z9pA	155	88.55