# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s4iA	175	4.754		
1xtmA	175	4.952		
1o7jA	327	6.434	c.88.1.1	81140
3cbnA	151	7.490		
2fafA	608	13.98		
1zuoA	186	14.13	d.20.1.1	125680
4pgaA	337	18.46	c.88.1.1	35565
1fzyA	149	19.17	d.20.1.1	65072
1x6oA	174	20.44	b.34.5.2,b.40.4.5	109493,109494
1khbA	625	20.74	c.91.1.1,c.109.1.1	68606,68607
1pzsA	208	21.38	b.1.8.1	104397
3ddjA	296	24.39		
2awfA	172	24.43	d.20.1.1	127432
1bkb	136	24.58		
2as0A	396	25.17	b.122.1.9,c.66.1.51	127227,127228
2c5qA	240	30.28		
1x3cA	73	30.30	g.37.1.1	121660
1uv4A	293	32.62	b.67.2.1	119705
1nnsA	326	34.16	c.88.1.1	85910
3c3bA	420	34.79		
1gyhA	318	34.92	b.67.2.1	70757
2c36A	285	42.43		
1tca	317	42.92		
2a4dA	160	43.40	d.20.1.1	126152
1hdiA	413	44.23	c.86.1.1	60964
1up9A	107	44.54	a.138.1.1	113390
1qfjA	232	46.86	b.43.4.2,c.25.1.1	25655,31545
1khiA	176	50.28	b.34.5.2,b.40.4.5	77408,77409
1jnrA	643	50.28	a.7.3.1,c.3.1.4,d.168.1.1	66966,66967,66968
1eejA	216	50.48	c.47.1.9,d.17.3.1	33057,38071
2j5bA	348	50.69		
2pkhA	148	52.29		
2nt0A	497	52.63	b.71.1.2,c.1.8.3	138561,138562
2himA	358	52.94		
1f1gA	154	56.08	b.1.8.1	76153
2qxlA	658	56.65		
1z2uA	150	58.03	d.20.1.1	124389
1tovA	98	61.11	b.34.10.1	107179
1ayl	541	67.04		
3bzhA	194	68.83		
1z9nA	177	69.43		
2r76A	152	71.06		
1jatA	155	72.82	d.20.1.1	62818
1svdM	110	76.28	d.73.1.1	119059
1ii2A	524	77.90	c.91.1.1,c.109.1.1	66146,66147
1oohA	126	78.98	a.39.2.1	93383
1q46A	175	79.13	a.60.14.1,b.40.4.5	111594,111595
2gjdA	157	86.41		
1esoA	154	86.50	b.1.8.1	22293
1earA	147	87.05	b.107.1.1,d.58.38.1	64875,64876
1y42X	392	87.36		
2ra6A	166	87.82