# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fafA 608 1.407 1z9nA 177 1.488 2qezA 455 4.113 1r62A 160 7.782 d.122.1.3 104816 2uubI 128 8.023 2aqpA 164 9.328 1gkrA 458 9.836 b.92.1.3,c.1.9.6 70251,70252 1zuoA 186 10.02 d.20.1.1 125680 2awfA 172 10.48 d.20.1.1 127432 1fzyA 149 10.63 d.20.1.1 65072 2nt0A 497 10.98 b.71.1.2,c.1.8.3 138561,138562 1eejA 216 13.14 c.47.1.9,d.17.3.1 33057,38071 1esoA 154 13.28 b.1.8.1 22293 1z2uA 150 15.36 d.20.1.1 124389 1hleA 345 16.07 e.1.1.1 42618 2ceyA 306 16.39 2hfsA 332 17.50 1khbA 625 18.23 c.91.1.1,c.109.1.1 68606,68607 1bkb 136 18.49 2zivA 311 18.53 2onuA 152 19.57 1jatA 155 20.71 d.20.1.1 62818 2as0A 396 23.12 b.122.1.9,c.66.1.51 127227,127228 1z9pA 155 23.65 1jdwA 423 23.66 d.126.1.2 41129 3bzhA 194 24.87 2fimA 276 26.14 1x6oA 174 26.47 b.34.5.2,b.40.4.5 109493,109494 1sc6A 404 27.35 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1jc4A 148 28.29 d.32.1.4 62863 1wz9A 375 28.73 1e4eA 343 28.76 c.30.1.2,d.142.1.1 59221,59222 1tovA 98 29.63 b.34.10.1 107179 2biiA 424 31.37 1f1gA 154 31.84 b.1.8.1 76153 1wzvA 155 31.89 d.20.1.1 121529 1jnrA 643 32.32 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 2c36A 285 32.46 2rk0A 136 34.49 2reeA 224 35.87 1y8xA 160 36.20 d.20.1.1 122769 1ed8A 449 36.46 c.76.1.1 34988 1zdnA 158 37.19 d.20.1.1 124943 3cbnA 151 37.71 1tt7A 330 38.07 b.35.1.2,c.2.1.1 112623,112624 2c5qA 240 39.80 1xtmA 175 40.11 1up9A 107 40.68 a.138.1.1 113390 1x3cA 73 43.59 g.37.1.1 121660 1ujnA 348 43.95 e.22.1.1 99460 2ze0A 555 45.22 3b8bA 292 45.56 1o7jA 327 45.60 c.88.1.1 81140 1u07A 90 46.64 d.212.1.2 112902 1lzlA 323 48.04 c.69.1.2 78306 1el5A 389 48.29 c.3.1.2,d.16.1.3 30369,37937 2ob3A 330 48.83 1e7uA 961 49.31 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2p3wA 112 50.33 1y0zA 330 52.07 b.82.2.8 116317 2gjdA 157 52.78 1ct9A 553 54.48 c.26.2.1,d.153.1.1 31616,41834 2ap1A 327 54.61 c.55.1.10,c.55.1.10 127108,127109 1miwA 404 55.31 a.173.1.1,d.218.1.4 79162,79163 1j32A 388 56.84 c.67.1.1 77067 1i7kA 179 56.89 d.20.1.1 61889 3b47A 134 57.44 3c0fB 91 57.85 2hw2A 143 58.22 1pzsA 208 59.88 b.1.8.1 104397 2ganA 190 59.97 d.108.1.1 134889 1vr0A 247 60.01 c.148.1.1 120428 1jnyA 435 60.39 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 2ds3A 761 60.98 1jjiA 311 61.28 c.69.1.2 66766 2q40A 367 62.61 e.50.1.1 139814 2vccA 891 63.41 1ey4A 149 66.17 b.40.1.1 24815 2jc5A 259 66.45 1yh2A 175 66.61 d.20.1.1 123158 1mrgA 263 68.10 d.165.1.1 42183 1w6tA 444 68.63 c.1.11.1,d.54.1.1 120670,120671 2pfzA 301 68.76 1i0dA 332 69.98 c.1.9.3 61487 2a38A 194 70.51 1yf9A 171 71.55 d.20.1.1 123054 2vsgA 358 71.99 h.4.1.1 45780 2gb4A 252 73.15 2g5fA 450 73.37 d.161.1.1 134654 2oaaA 249 76.00 2c2aA 258 78.96 a.30.2.1,d.122.1.3 129662,129663 2cmzA 423 79.67 1rqwA 207 80.16 b.25.1.1 97781 2pa6A 427 80.60 2qybA 181 81.53 2r76A 152 81.64 1w7jA 795 81.96 b.34.3.1,c.37.1.9 120688,120689 2qflA 267 82.44 1yifA 533 84.01 b.29.1.23,b.67.2.1 123283,123284 1u02A 239 84.53 c.108.1.15 107538 2a7lA 136 84.75 d.20.1.1 126350 1kw3B 292 85.58 d.32.1.3,d.32.1.3 77549,77550 1zxmA 400 85.96