# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1z9nA	177	8.232		
2aqpA	164	11.79		
1bkb	136	13.79		
2as0A	396	15.86	b.122.1.9,c.66.1.51	127227,127228
1o7jA	327	16.80	c.88.1.1	81140
1x3cA	73	19.60	g.37.1.1	121660
2fafA	608	19.68		
2j00I	128	20.08	d.14.1.1	137847
1esoA	154	20.80	b.1.8.1	22293
2vqeI	128	21.55		
1fzyA	149	21.88	d.20.1.1	65072
1khbA	625	22.20	c.91.1.1,c.109.1.1	68606,68607
1xtmA	175	23.81		
1s4iA	175	23.84		
1gyhA	318	25.06	b.67.2.1	70757
2uubI	128	27.33		
1fjgI	128	30.70	d.14.1.1	37559
1q46A	175	32.13	a.60.14.1,b.40.4.5	111594,111595
1up9A	107	33.23	a.138.1.1	113390
1uv4A	293	33.77	b.67.2.1	119705
3cbnA	151	34.52		
1ii2A	524	35.90	c.91.1.1,c.109.1.1	66146,66147
2c5qA	240	39.08		
1zuoA	186	40.76	d.20.1.1	125680
2z0jA	237	41.17		
1x6oA	174	41.49	b.34.5.2,b.40.4.5	109493,109494
4pgaA	337	44.16	c.88.1.1	35565
2snsA	149	45.82	b.40.1.1	24860
1tca	317	50.86		
1eejA	216	51.07	c.47.1.9,d.17.3.1	33057,38071
1bw3A	125	53.29	b.52.1.2	26899
2owlA	303	54.02		
1z9pA	155	54.21		
2nt0A	497	57.40	b.71.1.2,c.1.8.3	138561,138562
2awfA	172	59.50	d.20.1.1	127432
3c3pA	210	59.51		
3c3bA	420	62.78		
2r76A	152	64.93		
3ddjA	296	67.53		
1senA	164	68.87	c.47.1.1	105465
2qxlA	658	69.53		
2j5bA	348	70.35		
2a4dA	160	70.73	d.20.1.1	126152
2aqqA	164	70.80		
1nnsA	326	71.23	c.88.1.1	85910
1tovA	98	71.96	b.34.10.1	107179
2glzA	153	72.28	d.81.3.1	135348
2c36A	285	72.95		
2himA	358	73.72		
1u4nA	310	75.41	c.69.1.2	113021
1ayl	541	83.08		
1qfjA	232	85.33	b.43.4.2,c.25.1.1	25655,31545
1xfsA	178	86.91	d.129.3.5	109589
1khiA	176	89.73	b.34.5.2,b.40.4.5	77408,77409