# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s4iA	175	10.57		
1x3cA	73	12.02	g.37.1.1	121660
1xtmA	175	12.77		
3cbnA	151	14.45		
2uubI	128	15.32		
1fjgI	128	16.86	d.14.1.1	37559
1fzyA	149	18.21	d.20.1.1	65072
1o7jA	327	19.50	c.88.1.1	81140
2as0A	396	21.32	b.122.1.9,c.66.1.51	127227,127228
2vqeI	128	27.12		
2j00I	128	28.56	d.14.1.1	137847
2fafA	608	30.47		
2b5nA	323	31.00		
1bkb	136	31.11		
2c5qA	240	34.61		
3ddjA	296	35.31		
1senA	164	38.42	c.47.1.1	105465
2j5bA	348	41.76		
2r76A	152	42.85		
1tca	317	47.22		
2d4qA	257	47.25		
2c36A	285	50.24		
1z2uA	150	50.99	d.20.1.1	124389
1z9nA	177	51.11		
1ii2A	524	52.91	c.91.1.1,c.109.1.1	66146,66147
1oohA	126	54.04	a.39.2.1	93383
3c3pA	210	55.18		
1eejA	216	55.40	c.47.1.9,d.17.3.1	33057,38071
1up9A	107	56.20	a.138.1.1	113390
1uv4A	293	56.23	b.67.2.1	119705
1pzsA	208	59.87	b.1.8.1	104397
1khbA	625	60.67	c.91.1.1,c.109.1.1	68606,68607
1x6oA	174	61.08	b.34.5.2,b.40.4.5	109493,109494
2z0jA	237	62.51		
1zuoA	186	63.72	d.20.1.1	125680
1tovA	98	66.69	b.34.10.1	107179
1esoA	154	70.59	b.1.8.1	22293
2aqpA	164	70.97		
4pgaA	337	73.72	c.88.1.1	35565
3cegA	323	74.33		
2awfA	172	75.62	d.20.1.1	127432
1wzvA	155	76.11	d.20.1.1	121529
2snsA	149	76.30	b.40.1.1	24860
2d1kC	32	76.96		
1ypqA	135	81.73	d.169.1.1	123833
1gyhA	318	84.87	b.67.2.1	70757
1y8xA	160	85.18	d.20.1.1	122769
2a4dA	160	85.65	d.20.1.1	126152
2gjdA	157	87.91