# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1o7jA	327	10.92	c.88.1.1	81140
2fafA	608	11.22		
1s4iA	175	11.84		
1khbA	625	12.83	c.91.1.1,c.109.1.1	68606,68607
1xtmA	175	14.90		
1x3cA	73	16.63	g.37.1.1	121660
1bkb	136	17.31		
3cbnA	151	17.96		
2as0A	396	19.73	b.122.1.9,c.66.1.51	127227,127228
1x6oA	174	25.09	b.34.5.2,b.40.4.5	109493,109494
1eejA	216	25.20	c.47.1.9,d.17.3.1	33057,38071
1xfsA	178	27.62	d.129.3.5	109589
1z9nA	177	29.30		
3ddjA	296	30.52		
2snsA	149	31.44	b.40.1.1	24860
2c5qA	240	34.51		
1gyhA	318	37.34	b.67.2.1	70757
4pgaA	337	37.71	c.88.1.1	35565
1esoA	154	38.21	b.1.8.1	22293
2aqpA	164	38.54		
1tovA	98	39.35	b.34.10.1	107179
2glzA	153	41.80	d.81.3.1	135348
1ii2A	524	43.15	c.91.1.1,c.109.1.1	66146,66147
2b5nA	323	43.73		
1pzsA	208	44.13	b.1.8.1	104397
2c36A	285	44.35		
1oohA	126	45.92	a.39.2.1	93383
2z0jA	237	47.01		
1fzyA	149	47.26	d.20.1.1	65072
1up9A	107	47.27	a.138.1.1	113390
2j5bA	348	48.62		
2awfA	172	51.53	d.20.1.1	127432
2r76A	152	52.63		
2owlA	303	56.26		
1nnsA	326	58.39	c.88.1.1	85910
3c3pA	210	61.13		
1ayl	541	62.31		
2qxlA	658	63.38		
2qf2A	624	63.81		
1zuoA	186	65.77	d.20.1.1	125680
2vqeI	128	68.96		
3c3bA	420	69.35		
1qfjA	232	69.53	b.43.4.2,c.25.1.1	25655,31545
1q46A	175	71.41	a.60.14.1,b.40.4.5	111594,111595
2uubI	128	72.44		
2i6vA	87	80.36		
1khiA	176	83.73	b.34.5.2,b.40.4.5	77408,77409
1tca	317	84.77		
2nvhA	153	85.56	b.42.1.2	138630
2p3wA	112	88.41