# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2uubI	128	10.48		
2vqeI	128	12.54		
1fjgI	128	16.09	d.14.1.1	37559
2j00I	128	19.12	d.14.1.1	137847
1dnlA	199	19.88	b.45.1.1	25753
3cbnA	151	24.22		
1n13B	113	26.84		
3ddjA	296	31.93		
1g79A	218	34.01	b.45.1.1	25752
1t82A	155	38.58	d.38.1.5	106639
1uzkA	162	46.62	g.3.11.1,g.3.11.1,g.23.1.1	119806,119807,119808
2q1fA	1022	51.85		
1m9zA	111	52.93	g.7.1.3	78881
2oczA	231	54.07		
2p3wA	112	54.56		
3c3pA	210	58.88		
2awfA	172	59.65	d.20.1.1	127432
2pkhA	148	61.75		
2qwuA	211	62.54		
1f1gA	154	66.51	b.1.8.1	76153
1r45A	204	67.54	d.166.1.1	111683
1ci0A	228	70.07	b.45.1.1	25750
2phpA	192	71.30		
1q46A	175	73.88	a.60.14.1,b.40.4.5	111594,111595
2a2jA	246	75.92	b.45.1.1	126033
1budA	197	82.40	d.92.1.9	40328