# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vqeI	128	5.252		
2uubI	128	5.494		
1fjgI	128	5.875	d.14.1.1	37559
2j00I	128	9.197	d.14.1.1	137847
3cbnA	151	12.15		
2bzgA	232	22.47	c.66.1.36	129559
3brnA	157	28.43		
1zuoA	186	31.39	d.20.1.1	125680
1budA	197	34.61	d.92.1.9	40328
3clwA	507	35.73		
1fzyA	149	39.26	d.20.1.1	65072
1gyhA	318	39.47	b.67.2.1	70757
2aj7A	163	42.47	b.158.1.1	126842
1u3wA	374	42.93	b.35.1.2,c.2.1.1	113013,113014
2p3wA	112	43.45		
2gb4A	252	43.98		
1q46A	175	44.21	a.60.14.1,b.40.4.5	111594,111595
1f28A	297	47.59	d.117.1.1	59608
1tovA	98	47.74	b.34.10.1	107179
1n8kA	374	51.69	b.35.1.2,c.2.1.1	80298,80299
1o7jA	327	51.78	c.88.1.1	81140
2pkhA	148	56.51		
2awfA	172	58.61	d.20.1.1	127432
1x6oA	174	59.86	b.34.5.2,b.40.4.5	109493,109494
1dnlA	199	59.86	b.45.1.1	25753
2e4tA	519	60.11		
1v1aA	309	60.39	c.72.1.1	100249
1wvgA	359	60.80	c.2.1.2	121339
1qftA	175	63.15	b.60.1.1	27151
1m7gA	211	68.40	c.37.1.4	78724
1khbA	625	68.49	c.91.1.1,c.109.1.1	68606,68607
1p0fA	373	71.61	b.35.1.2,c.2.1.1	87642,87643
1ur4A	399	72.17	c.1.8.3	113402
2a38A	194	73.36		
3ddjA	296	75.09		
2az4A	429	76.29	d.157.1.10	127597
2jhfA	374	78.34	b.35.1.2,c.2.1.1	138314,138315
3bzhA	194	78.56		
2as0A	396	81.07	b.122.1.9,c.66.1.51	127227,127228
3c3pA	210	81.15		
2q0xA	335	81.73		
1snnA	227	81.93	d.115.1.2	105821
2cm4A	150	82.45		
1n13B	113	82.59		
2oitA	434	83.21		
1qwdA	177	83.67	b.60.1.1	96471
1up9A	107	84.13	a.138.1.1	113390
2himA	358	87.01		
1oi7A	288	89.25	c.2.1.8,c.23.4.1	87049,87050