# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x6oA	174	0.6562	b.34.5.2,b.40.4.5	109493,109494
3cbnA	151	3.916		
1h7sA	365	5.426	d.14.1.3,d.122.1.2	65705,65706
2oggA	152	6.390		
2ikkA	173	7.877		
1khiA	176	8.173	b.34.5.2,b.40.4.5	77408,77409
1u0mA	382	14.53	c.95.1.2,c.95.1.2	107557,107558
2pgbB	259	16.74		
2bkfA	87	18.74	d.15.2.2	128699
1vzqH	250	20.04		
1lrzA	426	21.13	a.2.7.4,d.108.1.4,d.108.1.4	78167,78168,78169
2nptB	100	21.98	d.15.2.2	138449
1r9fA	136	23.59	d.255.1.1	97257
2ov7A	137	23.97		
1bkbA	136	27.36	b.34.5.2,b.40.4.5	24609,25341
2pkhA	148	28.50		
2f4qA	346	28.75		
1i6pA	220	29.13	c.53.2.1	61848
1k5dB	201	30.88	b.55.1.3	68169
1nf3C	128	32.24	b.36.1.1	85596
1oo0A	147	34.55	d.232.1.1	87182
2c60A	111	35.98	d.15.2.2	129966
1bkb	136	36.95		
1x3mA	415	37.32	c.55.1.2,c.55.1.2	121664,121665
1cghA	224	37.99	b.47.1.2	26290
2cf8H	257	38.26		
2bvrH	252	39.05		
2jsoA	88	39.36		
2p9jA	162	39.56		
2hcuA	213	41.17		
2huhA	147	41.53		
1h8dH	260	48.84		
1ni3A	392	51.53	c.37.1.8,d.15.10.2	80531,80532
1o12A	376	52.23	b.92.1.5,c.1.9.10	80758,80759
3pviA	157	54.70	c.52.1.6	33300
1o7jA	327	56.38	c.88.1.1	81140
2i6vA	87	58.85		
2yrxA	451	61.37		
2i00A	406	62.17		
2ew0A	192	63.41	d.310.1.1	132445
2ebnA	289	63.53	c.1.8.5	28990
1wj6A	101	63.65	d.15.2.2	114693
1nu0A	138	66.32	c.55.3.8	92165
1l5xA	280	70.93	c.106.1.1	77718
2e5aA	347	71.77		
1v30A	124	73.98	d.269.1.1	113496
2ebn	289	74.17		
1ihnA	113	76.08	c.103.1.1	62388
2cm5A	166	76.17	b.7.1.2	130613
2d51A	406	77.19		
2q18X	293	77.75		
1zhvA	134	77.90	d.58.18.8,d.58.18.8	125109,125110
1pyfA	312	78.08	c.1.7.1	95334
2ap1A	327	79.34	c.55.1.10,c.55.1.10	127108,127109
1vjfA	180	79.48	d.116.1.1	100809
1wmhA	89	81.61	d.15.2.2	114744
2qtdA	105	81.62		
1nnsA	326	82.40	c.88.1.1	85910
1va4A	279	82.45	c.69.1.12	108458
2himA	358	82.53		
1rsy	152	82.84		
1narA	290	83.31	c.1.8.5	28988
1vlcA	366	87.26	c.77.1.1	108743
1xt8A	292	89.47	c.94.1.1	122293