# List of top-scoring protein chains for T0514.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1kufA 203 3.063 d.92.1.9 73007 1kugA 203 3.799 d.92.1.9 73008 1t1iA 364 3.926 c.41.1.2 106248 1t1gA 364 5.431 c.41.1.2 106246 1gt91 357 5.905 1wniA 201 6.218 d.92.1.9 109435 1t1eA 552 6.536 c.41.1.2,d.58.3.2 106244,106245 1zvjA 364 8.505 1sioA 364 8.560 c.41.1.2 98888 1zvkA 358 20.22 1siuA 364 20.68 c.41.1.2 98891 1i1nA 226 23.19 c.66.1.7 71102 1kelL 217 30.39 b.1.1.1,b.1.1.2 20112,21142 1kb6A 110 34.42 g.39.1.2 72273 1yeeL 219 38.79 b.1.1.1,b.1.1.2 20156,21186 1qgjA 300 39.16 a.93.1.1 18691 2jzaA 130 40.72 1tqbC 219 41.28 b.1.1.1,b.1.1.2 107215,107216 1cl7L 216 41.84 b.1.1.1,b.1.1.2 20418,21388 1pa2A 306 44.82 a.93.1.1 18693 1gwoA 309 46.62 a.93.1.1 83349 1gwuA 309 47.63 a.93.1.1 83351 1gx2A 309 49.25 a.93.1.1 83360 1ufgA 151 52.25 b.1.16.1 107814 1gwtA 309 52.43 a.93.1.1 83350 2nzxA 371 52.50 1h4eA 201 52.82 c.68.1.8 83483 1gw2A 308 52.85 a.93.1.1 83341 2q76A 212 53.27 2atjA 308 53.93 a.93.1.1 18675 7atjA 308 54.41 a.93.1.1 18673 1hchA 306 54.42 a.93.1.1 70965 1w4wA 323 55.93 a.93.1.1 120640 2gk0A 217 56.69 1hjjA 201 59.44 c.68.1.8 83487 1yedA 219 60.85 b.1.1.1,b.1.1.2 20150,21180 1hjlA 201 60.95 c.68.1.8 83488 2sliA 679 61.07 b.29.1.9,b.68.1.1 24274,27611 1h4cA 201 61.17 c.68.1.8 83481 1fr9A 194 61.55 c.68.1.8 34579 1e5kA 201 61.69 c.68.1.8 34578 1h4dA 201 61.81 c.68.1.8 83482 2ptmA 198 63.11 1gpoL 219 68.49 b.1.1.1,b.1.1.2 20224,21236 4atjA 309 70.16 a.93.1.1 81266 1i9jL 219 70.61 b.1.1.1,b.1.1.2 71146,71147 2a77L 216 71.28 2v36A 376 71.79 1yejL 219 72.52 b.1.1.1,b.1.1.2 20140,21170 2jelL 217 72.55 b.1.1.1,b.1.1.2 19978,21034 1cvrA 435 73.64 b.1.18.12,c.17.1.2 21949,31006 1plgL 215 75.84 b.1.1.1,b.1.1.2 20080,21112 1cr9L 219 77.77 b.1.1.1,b.1.1.2 20430,21400 2z4qA 219 80.03 2dquL 219 81.16 1n4xL 113 82.68 b.1.1.1 85326 2ai0L 217 86.03 2a1wL 216 86.15 1judA 232 88.25 c.108.1.1 43325 1zrnA 232 88.67 c.108.1.1 43323