# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ro0A	216	1.578	d.264.1.2	97664
2g0bA	198	3.718		
3cbnA	151	4.375		
1ro2A	216	4.746	d.264.1.2	97665
1x6oA	174	5.494	b.34.5.2,b.40.4.5	109493,109494
1iirA	415	7.229	c.87.1.5	62453
1eejA	216	11.45	c.47.1.9,d.17.3.1	33057,38071
1x3cA	73	12.60	g.37.1.1	121660
1ad2A	228	14.46	e.24.1.1	43353
1r6uA	437	16.81	c.26.1.1	97163
3cebA	194	18.11		
3ullA	132	19.04	b.40.4.3	25282
1g7sA	594	20.10	b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8	25712,25713,31032,32147
1khiA	176	20.38	b.34.5.2,b.40.4.5	77408,77409
1vpvA	300	21.04	c.119.1.1	113975
1iz6A	138	25.60	b.34.5.2,b.40.4.5	76976,76977
2uxyA	341	25.75		
2awfA	172	27.56	d.20.1.1	127432
1vjrA	271	30.43	c.108.1.14	100832
1qwdA	177	32.26	b.60.1.1	96471
1mo7A	213	34.40	d.220.1.1	85028
2nvoA	535	35.17		
1pfsA	78	41.38	b.40.4.7	25391
2b5iC	199	42.25	b.1.2.1,b.1.2.1	127898,127899
1keqA	248	42.88	b.74.1.1	72387
2nmxA	260	45.20	b.74.1.1	138382
1ne9A	335	47.09	d.108.1.4,d.108.1.4	91839,91840
1y42X	392	50.52		
2oxnA	340	54.41		
1zhvA	134	55.14	d.58.18.8,d.58.18.8	125109,125110
2ip1A	432	55.30		
1ez0A	510	57.36	c.82.1.1	35385
1vgwA	231	57.49	c.68.1.13	100612
2fr2A	172	58.08	b.60.1.8	133963
1fzyA	149	58.61	d.20.1.1	65072
1pzsA	208	58.87	b.1.8.1	104397
1mgpA	313	62.95	c.119.1.1	79098
3c3bA	420	63.01		
2fp8A	322	63.69		
2d1zA	436	65.89		
1v58A	241	67.43	c.47.1.9,d.17.3.1	108371,108372
2r76A	152	67.77		
2yzsA	315	68.00		
2dyuA	334	68.18		
1jsmB	176	70.60	h.3.1.1	63265
1bkb	136	72.16		
2a4dA	160	73.97	d.20.1.1	126152
1xedA	117	78.05	b.1.1.1	115229
1pv1A	299	78.49	c.69.1.34	111639
1jmxA	494	79.42	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
3cswA	285	80.33		
2o7rA	338	80.56		
2fepA	289	83.09		
1ue1A	164	83.95	b.40.4.3	99243
2fo3A	125	86.93	d.20.1.1	133868
3c3kA	285	89.31		
2i51A	195	89.88