# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ro0A	216	1.905	d.264.1.2	97664
2g0bA	198	3.209		
3cbnA	151	4.233		
1eejA	216	5.538	c.47.1.9,d.17.3.1	33057,38071
1ro2A	216	5.680	d.264.1.2	97665
1x6oA	174	6.768	b.34.5.2,b.40.4.5	109493,109494
1iirA	415	7.938	c.87.1.5	62453
1vpvA	300	8.419	c.119.1.1	113975
2d1zA	436	10.46		
1khiA	176	12.71	b.34.5.2,b.40.4.5	77408,77409
1g7sA	594	13.81	b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8	25712,25713,31032,32147
1ad2A	228	14.29	e.24.1.1	43353
1iz6A	138	14.52	b.34.5.2,b.40.4.5	76976,76977
2fr2A	172	16.22	b.60.1.8	133963
2yzsA	315	26.90		
1jmxA	494	28.01	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
1x3cA	73	29.81	g.37.1.1	121660
2awfA	172	30.47	d.20.1.1	127432
2vqeI	128	30.76		
1r6uA	437	33.48	c.26.1.1	97163
1mgpA	313	34.69	c.119.1.1	79098
3ullA	132	38.00	b.40.4.3	25282
1keqA	248	38.65	b.74.1.1	72387
1yadA	221	42.60		
2fafA	608	43.46		
1qu0A	191	44.11	b.29.1.4	24225
1pfsA	78	45.03	b.40.4.7	25391
1ne9A	335	45.28	d.108.1.4,d.108.1.4	91839,91840
2uxyA	341	47.34		
2qdxA	257	48.39		
1uwvA	433	49.01	b.40.4.12,c.66.1.40	100128,100129
1dzkA	157	49.25	b.60.1.1	27096
1qwdA	177	52.79	b.60.1.1	96471
3c3bA	420	56.23		
1vjrA	271	56.29	c.108.1.14	100832
1txdA	385	56.53	a.87.1.1,b.55.1.1	107422,107423
2d4qA	257	56.91		
1g99A	408	59.46	c.55.1.2,c.55.1.2	33457,33458
1zhvA	134	60.59	d.58.18.8,d.58.18.8	125109,125110
1pv1A	299	61.58	c.69.1.34	111639
1bw3A	125	62.26	b.52.1.2	26899
1fh9A	312	62.99	c.1.8.3	28913
2b5iC	199	64.10	b.1.2.1,b.1.2.1	127898,127899
2oynA	146	66.10		
1svdM	110	66.97	d.73.1.1	119059
1lm4A	194	68.75	d.167.1.1	84626
1v3yA	192	68.92	d.167.1.1	113508
2opkA	112	70.39		
1y43B	173	70.86		
2dt8A	280	70.90		
1gl4A	285	73.53	d.22.1.2,g.3.11.5	65286,65287
2engA	210	77.30	b.52.1.1	26895
2hq9A	149	78.62	b.45.1.1	136659
1fzyA	149	78.76	d.20.1.1	65072
2pkhA	148	79.21		
2pqvA	154	81.50		
1g79A	218	82.71	b.45.1.1	25752
1rfeA	162	84.03	b.45.1.1	111796
3d2lA	243	85.30		
3bwgA	239	88.46		
1s4iA	175	88.52		
2bgiA	272	89.09