# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ro0A	216	2.684	d.264.1.2	97664
2g0bA	198	3.609		
1iirA	415	4.092	c.87.1.5	62453
3cbnA	151	4.499		
2d1zA	436	6.124		
1ad2A	228	7.796	e.24.1.1	43353
1ro2A	216	8.255	d.264.1.2	97665
1x6oA	174	8.356	b.34.5.2,b.40.4.5	109493,109494
1eejA	216	11.42	c.47.1.9,d.17.3.1	33057,38071
1vpvA	300	15.35	c.119.1.1	113975
2awfA	172	16.31	d.20.1.1	127432
1keqA	248	18.06	b.74.1.1	72387
2vqeI	128	22.44		
1khiA	176	22.68	b.34.5.2,b.40.4.5	77408,77409
1r6uA	437	23.46	c.26.1.1	97163
1vjrA	271	25.76	c.108.1.14	100832
1x3cA	73	27.49	g.37.1.1	121660
1g7sA	594	29.21	b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8	25712,25713,31032,32147
2uxyA	341	29.52		
1v58A	241	31.78	c.47.1.9,d.17.3.1	108371,108372
1iz6A	138	36.36	b.34.5.2,b.40.4.5	76976,76977
1yadA	221	36.62		
3ullA	132	40.85	b.40.4.3	25282
2o7rA	338	42.26		
1gl4A	285	44.54	d.22.1.2,g.3.11.5	65286,65287
2b5iC	199	47.10	b.1.2.1,b.1.2.1	127898,127899
3c3bA	420	48.08		
2opkA	112	49.32		
2engA	210	53.72	b.52.1.1	26895
1y42X	392	54.73		
1fh9A	312	57.02	c.1.8.3	28913
1fzyA	149	59.86	d.20.1.1	65072
2fr2A	172	61.40	b.60.1.8	133963
2j67A	178	62.36		
1ez0A	510	63.35	c.82.1.1	35385
2fepA	289	64.20		
1pv1A	299	64.60	c.69.1.34	111639
2a4dA	160	66.00	d.20.1.1	126152
2nmxA	260	66.17	b.74.1.1	138382
1g99A	408	68.01	c.55.1.2,c.55.1.2	33457,33458
3c3kA	285	68.42		
2hq9A	149	70.65	b.45.1.1	136659
1zhvA	134	71.68	d.58.18.8,d.58.18.8	125109,125110
2v6eA	558	72.36		
2nvoA	535	72.87		
2d4qA	257	74.14		
1jmxA	494	74.31	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
1bw3A	125	74.52	b.52.1.2	26899
1mo7A	213	76.61	d.220.1.1	85028
2yzsA	315	78.03		
2oczA	231	78.26		
2dyuA	334	79.48		
1l9xA	315	81.58	c.23.16.1	73762
1ne9A	335	82.34	d.108.1.4,d.108.1.4	91839,91840
2ip1A	432	87.82		
1vqoT	120	88.36	b.34.5.1	120381