# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vqeI	128	3.651		
3cbnA	151	4.724		
2d1zA	436	4.847		
2uubI	128	15.07		
2j00I	128	18.41	d.14.1.1	137847
1x6oA	174	18.77	b.34.5.2,b.40.4.5	109493,109494
1j6wA	175	26.45	d.185.1.2	62663
2opkA	112	26.49		
1budA	197	27.35	d.92.1.9	40328
1fjgI	128	27.95	d.14.1.1	37559
1iirA	415	36.64	c.87.1.5	62453
2q48A	166	38.76	d.32.1.9	139829
3bv4A	341	39.19		
1f1gA	154	43.25	b.1.8.1	76153
1vgwA	231	46.81	c.68.1.13	100612
2jesA	503	47.68		
1i5nA	146	48.10	a.24.10.3	61805
2q9kA	151	48.45		
1z5vA	474	48.55		
2fepA	289	51.02		
1x8hA	228	53.64	d.157.1.1	114961
1eejA	216	54.49	c.47.1.9,d.17.3.1	33057,38071
2p0tA	176	54.72		
2gviA	204	55.51		
3b8dA	363	58.28		
2phpA	192	64.05		
2oczA	231	64.10		
1bylA	125	64.84	d.32.1.2	38495
1w9aA	147	65.67	b.45.1.1	114408
1g79A	218	68.78	b.45.1.1	25752
1ldg	316	69.85		
3ullA	132	70.22	b.40.4.3	25282
1p0fA	373	72.53	b.35.1.2,c.2.1.1	87642,87643
1adjA	421	73.88	c.51.1.1,d.104.1.1	33188,40737
1ci0A	228	74.03	b.45.1.1	25750
2fg9A	178	76.48	b.45.1.1	133426
1ne9A	335	77.08	d.108.1.4,d.108.1.4	91839,91840
1h4vB	421	77.82	c.51.1.1,d.104.1.1	60624,60625
2engA	210	78.66	b.52.1.1	26895
1nrgA	261	80.29	b.45.1.1	80694
2hqyA	305	82.48		
2hq9A	149	83.77	b.45.1.1	136659
1vjrA	271	84.25	c.108.1.14	100832
1n57A	291	85.79	c.23.16.2	85328
256bA	106	86.35	a.24.3.1	16539
1u9cA	224	86.42	c.23.16.2	113234
1i1nA	226	87.88	c.66.1.7	71102
2snsA	149	88.98	b.40.1.1	24860
2aq6A	147	89.02	b.45.1.1	127156