# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1eejA	216	1.996	c.47.1.9,d.17.3.1	33057,38071
1ro0A	216	4.472	d.264.1.2	97664
2hu5A	582	4.770	b.69.7.2,c.69.1.33	136763,136764
1w6tA	444	4.922	c.1.11.1,d.54.1.1	120670,120671
2av4A	162	8.051		
2qezA	455	8.059		
1r62A	160	9.412	d.122.1.3	104816
1l1lA	739	9.932	c.7.1.4	73470
1lf7A	182	10.18	b.60.1.1	73878
1pv1A	299	13.73	c.69.1.34	111639
1zhvA	134	14.79	d.58.18.8,d.58.18.8	125109,125110
1x6oA	174	15.02	b.34.5.2,b.40.4.5	109493,109494
2uxyA	341	16.45		
1han	297	16.71		
2fafA	608	16.76		
2okjA	504	19.56		
2yzsA	315	20.04		
1wb0A	445	20.47	c.1.8.5,d.26.3.1	120825,120826
1h8eA	510	21.30	a.69.1.1,b.49.1.1,c.37.1.11	60738,60739,60740
1kw3B	292	21.58	d.32.1.3,d.32.1.3	77549,77550
1sc6A	404	21.96	c.2.1.4,c.23.12.1,d.58.18.1	118932,118933,118934
2nt0A	497	22.63	b.71.1.2,c.1.8.3	138561,138562
2awfA	172	22.77	d.20.1.1	127432
3csvA	333	22.81		
3cbnA	151	22.93		
2uubI	128	22.94		
2jg1A	330	24.69		
1jc4A	148	26.40	d.32.1.4	62863
1khiA	176	27.34	b.34.5.2,b.40.4.5	77408,77409
1gkrA	458	27.46	b.92.1.3,c.1.9.6	70251,70252
1wviA	257	28.13	c.108.1.14	114915
1q3iA	214	32.79	d.220.1.1	104524
2cfuA	658	33.72		
2ganA	190	35.30	d.108.1.1	134889
1y9aA	360	35.34		
2cmzA	423	36.79		
1qwdA	177	38.49	b.60.1.1	96471
2dyuA	334	39.40		
1w7jA	795	40.83	b.34.3.1,c.37.1.9	120688,120689
1x3cA	73	40.96	g.37.1.1	121660
1iyxA	432	42.77	c.1.11.1,d.54.1.1	83815,83816
2nacA	393	43.05	c.2.1.4,c.23.12.1	30088,31348
2onuA	152	44.02		
3ullA	132	44.13	b.40.4.3	25282
2qcvA	332	46.25		
2cbiA	594	46.63	a.246.1.1,c.1.8.10,d.92.2.3	130179,130180,130181
2aqmA	154	49.23		
1fobA	334	49.63	c.1.8.3	83255
2dt8A	280	50.52		
1n1tA	641	50.88	b.29.1.15,b.68.1.1	79821,79822
2c0hA	353	51.06	c.1.8.3	129594
1g7sA	594	51.43	b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8	25712,25713,31032,32147
1hkkA	364	52.72	c.1.8.5,d.26.3.1	90634,90635
1m5q1	130	54.13		
2g7zA	282	54.15		
2fr2A	172	54.25	b.60.1.8	133963
1d0yA	761	54.35	b.34.3.1,c.37.1.9	24581,32178
1ox0A	430	55.25	c.95.1.1,c.95.1.1	87495,87496
2b5iC	199	56.34	b.1.2.1,b.1.2.1	127898,127899
1b0uA	262	59.85	c.37.1.12	32370
1d4xA	375	59.89	c.55.1.1,c.55.1.1	59107,59108
2bvcA	486	60.03	d.15.9.1,d.128.1.1	129243,129244
2opkA	112	60.18		
1w0pA	781	60.55	b.29.1.8,b.29.1.8,b.68.1.1	109038,109039,109040
2f69A	261	60.78	b.76.2.1,b.85.7.1	133035,133036
1mo7A	213	60.87	d.220.1.1	85028
1ylhA	560	61.86		
2o4vA	411	62.10		
2hq9A	149	62.66	b.45.1.1	136659
1ll7A	392	62.73	c.1.8.5,d.26.3.1	78085,78086
1ehiA	377	62.99	c.30.1.2,d.142.1.1	31716,41484
1lm4A	194	63.09	d.167.1.1	84626
3cl6A	308	63.94		
1loxA	662	64.29	a.119.1.2,b.12.1.1	19238,23638
2oaaA	249	65.04		
2fo3A	125	65.07	d.20.1.1	133868
1lf6A	684	65.49	a.102.1.5,b.30.5.5	77918,77919
1fzyA	149	66.15	d.20.1.1	65072
1keqA	248	67.13	b.74.1.1	72387
1u0mA	382	69.26	c.95.1.2,c.95.1.2	107557,107558
1dzkA	157	69.99	b.60.1.1	27096
2b8nA	429	71.60	c.118.1.1	128093
2ghpA	292	72.14	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
1zjaA	557	72.14		
1i0dA	332	74.52	c.1.9.3	61487
1vgwA	231	76.23	c.68.1.13	100612
1czjA	111	76.52	a.138.1.1	19663
1i7dA	659	76.98	e.10.1.1	61886
2q7nA	488	77.50		
2gupA	292	78.90	c.55.1.10,c.55.1.10	135744,135745
2fpqA	444	79.28		
2nmxA	260	80.63	b.74.1.1	138382
2qhkA	174	80.66		
1gl4A	285	81.09	d.22.1.2,g.3.11.5	65286,65287
2absA	383	86.29	c.72.1.1	126534
1mgpA	313	86.32	c.119.1.1	79098
2hq2A	354	86.39	e.62.1.1	136656
3d3aA	612	86.68		
2d1zA	436	88.97		
2ywvA	244	89.14