# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ro0A	216	2.791	d.264.1.2	97664
2g0bA	198	3.406		
3cbnA	151	4.858		
1iirA	415	5.793	c.87.1.5	62453
1ro2A	216	6.580	d.264.1.2	97665
1eejA	216	14.55	c.47.1.9,d.17.3.1	33057,38071
3csvA	333	15.27		
1ad2A	228	15.38	e.24.1.1	43353
2d1zA	436	15.50		
1x6oA	174	17.41	b.34.5.2,b.40.4.5	109493,109494
2uxyA	341	18.15		
3c3bA	420	19.03		
1vpvA	300	19.82	c.119.1.1	113975
2awfA	172	19.88	d.20.1.1	127432
1x3cA	73	21.97	g.37.1.1	121660
2a4dA	160	26.14	d.20.1.1	126152
2dyuA	334	27.76		
1khiA	176	27.83	b.34.5.2,b.40.4.5	77408,77409
1lf7A	182	31.83	b.60.1.1	73878
1r6uA	437	32.75	c.26.1.1	97163
3cebA	194	34.98		
1mgpA	313	35.39	c.119.1.1	79098
3ullA	132	39.03	b.40.4.3	25282
1zhvA	134	39.93	d.58.18.8,d.58.18.8	125109,125110
1ez0A	510	40.34	c.82.1.1	35385
2yzsA	315	41.10		
2j67A	178	41.78		
2v6eA	558	45.50		
2ip1A	432	45.73		
1mo7A	213	48.08	d.220.1.1	85028
1fzyA	149	48.93	d.20.1.1	65072
1keqA	248	49.62	b.74.1.1	72387
2cbiA	594	51.08	a.246.1.1,c.1.8.10,d.92.2.3	130179,130180,130181
2b5iC	199	51.28	b.1.2.1,b.1.2.1	127898,127899
1xedA	117	53.46	b.1.1.1	115229
2fo3A	125	54.36	d.20.1.1	133868
1h6dA	433	54.96	c.2.1.3,d.81.1.5	65656,65657
1g7sA	594	55.31	b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8	25712,25713,31032,32147
2onuA	152	57.70		
2hq9A	149	58.02	b.45.1.1	136659
1vgwA	231	60.72	c.68.1.13	100612
1fh9A	312	62.74	c.1.8.3	28913
3bf2A	152	62.91		
1thgA	544	63.70	c.69.1.17	34763
1vjrA	271	65.74	c.108.1.14	100832
1svdM	110	65.88	d.73.1.1	119059
1pv1A	299	66.96	c.69.1.34	111639
1b0uA	262	71.14	c.37.1.12	32370
1wviA	257	71.16	c.108.1.14	114915
1y42X	392	71.48		
1ne9A	335	74.12	d.108.1.4,d.108.1.4	91839,91840
2nmxA	260	74.85	b.74.1.1	138382
1qwdA	177	75.60	b.60.1.1	96471
1bw3A	125	75.70	b.52.1.2	26899
2d1kC	32	78.64		
1yadA	221	82.62		
2r76A	152	84.01		
2nvoA	535	85.37		
1g67A	225	85.80	c.1.3.1	60311
2o7rA	338	88.24		
2oxnA	340	88.69