# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g0bA	198	4.148		
1ro0A	216	4.229	d.264.1.2	97664
1eejA	216	7.689	c.47.1.9,d.17.3.1	33057,38071
1ro2A	216	9.562	d.264.1.2	97665
1ad2A	228	9.585	e.24.1.1	43353
2hq9A	149	10.64	b.45.1.1	136659
1x3cA	73	11.25	g.37.1.1	121660
1iirA	415	11.30	c.87.1.5	62453
3cbnA	151	12.27		
2vqeI	128	12.38		
1vpvA	300	13.02	c.119.1.1	113975
1gl4A	285	13.73	d.22.1.2,g.3.11.5	65286,65287
2d1zA	436	15.28		
1x6oA	174	21.28	b.34.5.2,b.40.4.5	109493,109494
1iz6A	138	23.59	b.34.5.2,b.40.4.5	76976,76977
1keqA	248	25.61	b.74.1.1	72387
3ullA	132	25.66	b.40.4.3	25282
2oczA	231	29.06		
1zhvA	134	31.29	d.58.18.8,d.58.18.8	125109,125110
1mo7A	213	32.95	d.220.1.1	85028
2f69A	261	40.50	b.76.2.1,b.85.7.1	133035,133036
2opkA	112	41.11		
1ez0A	510	44.24	c.82.1.1	35385
2b5iC	199	45.76	b.1.2.1,b.1.2.1	127898,127899
2j00I	128	47.60	d.14.1.1	137847
2r76A	152	48.81		
1vjrA	271	49.49	c.108.1.14	100832
1mgpA	313	49.51	c.119.1.1	79098
1fjgI	128	49.58	d.14.1.1	37559
3c3bA	420	50.84		
1ne9A	335	55.62	d.108.1.4,d.108.1.4	91839,91840
2bgiA	272	57.56		
2uubI	128	60.70		
2awfA	172	61.37	d.20.1.1	127432
2j67A	178	62.01		
1khiA	176	65.28	b.34.5.2,b.40.4.5	77408,77409
2snsA	149	66.60	b.40.1.1	24860
1bw3A	125	67.97	b.52.1.2	26899
1h6dA	433	68.65	c.2.1.3,d.81.1.5	65656,65657
1g7sA	594	73.23	b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8	25712,25713,31032,32147
1t3bA	211	74.59	c.47.1.9,d.17.3.1	106341,106342
1dzkA	157	76.24	b.60.1.1	27096
1czjA	111	77.14	a.138.1.1	19663
1lm4A	194	80.78	d.167.1.1	84626
2aqpA	164	81.11		
2o7rA	338	83.52		
2a4dA	160	84.20	d.20.1.1	126152
1qwdA	177	87.52	b.60.1.1	96471