# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ro0A	216	2.413	d.264.1.2	97664
2g0bA	198	3.712		
1ad2A	228	4.167	e.24.1.1	43353
3cbnA	151	4.991		
1x3cA	73	5.707	g.37.1.1	121660
1vpvA	300	5.954	c.119.1.1	113975
1ro2A	216	6.833	d.264.1.2	97665
1iirA	415	10.46	c.87.1.5	62453
1eejA	216	14.73	c.47.1.9,d.17.3.1	33057,38071
1zhvA	134	17.42	d.58.18.8,d.58.18.8	125109,125110
2d1zA	436	18.95		
1x6oA	174	26.89	b.34.5.2,b.40.4.5	109493,109494
2f69A	261	26.91	b.76.2.1,b.85.7.1	133035,133036
2hq9A	149	29.39	b.45.1.1	136659
2oczA	231	31.50		
1h6dA	433	32.52	c.2.1.3,d.81.1.5	65656,65657
2fr2A	172	35.56	b.60.1.8	133963
2vqeI	128	37.95		
2i51A	195	40.35		
1r6uA	437	41.25	c.26.1.1	97163
1g79A	218	41.57	b.45.1.1	25752
1mgpA	313	42.42	c.119.1.1	79098
1keqA	248	44.06	b.74.1.1	72387
1ez0A	510	46.08	c.82.1.1	35385
2awfA	172	46.71	d.20.1.1	127432
1vjrA	271	47.37	c.108.1.14	100832
1vgwA	231	48.86	c.68.1.13	100612
1mo7A	213	49.91	d.220.1.1	85028
2opkA	112	51.88		
1fjgI	128	53.43	d.14.1.1	37559
2uubI	128	57.08		
2j67A	178	59.14		
1ci0A	228	59.27	b.45.1.1	25750
2uxyA	341	61.66		
2nvoA	535	66.71		
1fzyA	149	67.49	d.20.1.1	65072
2d1kC	32	67.98		
2a7lA	136	68.86	d.20.1.1	126350
1f1gA	154	69.50	b.1.8.1	76153
2b5iC	199	70.92	b.1.2.1,b.1.2.1	127898,127899
1y43B	173	70.99		
1nrgA	261	71.91	b.45.1.1	80694
3c3bA	420	75.93		
1svdM	110	76.07	d.73.1.1	119059
2r76A	152	76.72		
2snsA	149	78.34	b.40.1.1	24860
1ne9A	335	78.45	d.108.1.4,d.108.1.4	91839,91840
1mla	309	78.60		
1khiA	176	79.92	b.34.5.2,b.40.4.5	77408,77409
1g7sA	594	81.54	b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8	25712,25713,31032,32147
3ullA	132	85.13	b.40.4.3	25282
2elnA	38	88.83		
2d4qA	257	88.95