# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vqeI	128	3.504		
2uubI	128	9.621		
1j6wA	175	9.835	d.185.1.2	62663
3cbnA	151	13.47		
2j00I	128	15.97	d.14.1.1	137847
3b82A	842	18.28		
1g99A	408	21.56	c.55.1.2,c.55.1.2	33457,33458
1lm6A	215	27.60	d.167.1.1	84628
2d1zA	436	28.17		
1g79A	218	28.46	b.45.1.1	25752
1ne9A	335	28.58	d.108.1.4,d.108.1.4	91839,91840
1fjgI	128	30.59	d.14.1.1	37559
2oczA	231	30.65		
1ci0A	228	33.75	b.45.1.1	25750
2dgmA	466	34.51	c.67.1.6	131508
1q79A	514	35.49	a.160.1.1,d.218.1.3,d.58.16.1	104548,104549,104550
1eejA	216	37.25	c.47.1.9,d.17.3.1	33057,38071
1y6hA	177	37.68	d.167.1.1	116505
1p0fA	373	38.81	b.35.1.2,c.2.1.1	87642,87643
1nrgA	261	45.28	b.45.1.1	80694
2aieP	203	47.01		
2jhfA	374	47.13	b.35.1.2,c.2.1.1	138314,138315
1j98A	157	52.16	d.185.1.2	62755
1budA	197	55.63	d.92.1.9	40328
1n57A	291	55.98	c.23.16.2	85328
2a2jA	246	60.34	b.45.1.1	126033
2rijA	387	62.42		
2ew5A	181	62.54		
1h32A	261	65.05	a.3.1.8,a.3.1.8	76618,76619
1v3yA	192	66.30	d.167.1.1	113508
1g7sA	594	68.19	b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8	25712,25713,31032,32147
1vgwA	231	69.52	c.68.1.13	100612
1w6tA	444	71.69	c.1.11.1,d.54.1.1	120670,120671
1przA	252	73.18	d.265.1.3	95064
1t9mA	214	73.74	b.45.1.1	112364
1u9cA	224	76.43	c.23.16.2	113234
2opkA	112	77.45		
2ougA	162	77.78		
2os0A	188	83.67		
1vjeA	166	89.44	d.185.1.2	100807