# List of top-scoring protein chains for T0514.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qgjA 300 4.19e-01 1bgp a.93.1.1 18691 1kufA 203 7.91e-01 d.92.1.9 73007 1bgpA 309 8.79e-01 a.93.1.1 18690 1gx2A 309 9.02e-01 a.93.1.1 83360 1gwuA 309 9.32e-01 a.93.1.1 83351 1gw2A 308 9.34e-01 a.93.1.1 83341 1gwoA 309 9.37e-01 a.93.1.1 83349 2atjA 308 9.49e-01 1bgp a.93.1.1 18675 1hchA 306 9.50e-01 a.93.1.1 70965 1gwtA 309 9.53e-01 a.93.1.1 83350 7atjA 308 9.55e-01 1bgp a.93.1.1 18673 1pa2A 306 9.79e-01 1bgp a.93.1.1 18693 1w4wA 323 9.81e-01 a.93.1.1 120640 1t1iA 364 1.01e+00 c.41.1.2 106248 1gt91 357 1.09e+00 4atjA 309 1.26e+00 a.93.1.1 81266 1t1gA 364 1.31e+00 c.41.1.2 106246 1t1eA 552 1.45e+00 c.41.1.2,d.58.3.2 106244,106245 1x3cA 73 1.88e+00 g.37.1.1 121660 1kugA 203 2.15e+00 d.92.1.9 73008 1nwvA 129 2.19e+00 g.18.1.1,g.18.1.1 86304,86305 1kzmA 308 2.33e+00 a.93.1.1 77637 2q7zA 1931 2.45e+00 1wniA 201 4.37e+00 d.92.1.9 109435 1zvjA 364 4.40e+00 1sioA 364 4.41e+00 c.41.1.2 98888 1m11R 243 4.87e+00 i.6.1.1 74366 2dyuA 334 5.29e+00 1ok3A 254 5.58e+00 g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1 93208,93209,93210,93211 1upnE 129 6.79e+00 g.18.1.1,g.18.1.1 99764,99765 2c8iE 316 7.01e+00 g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1 130105,130106,130107,130108 1h03P 125 7.35e+00 g.18.1.1,g.18.1.1 83411,83412 1cvrA 435 7.71e+00 1cvrA b.1.18.12,c.17.1.2 21949,31006 1h2pP 125 9.14e+00 g.18.1.1,g.18.1.1 83466,83467 1zvkA 358 9.17e+00 1siuA 364 9.36e+00 c.41.1.2 98891 1danT 80 1.03e+01 1boy b.1.2.1 21953 1rzjC 185 1.24e+01 b.1.1.1,b.1.1.3 98198,98199 3cd4A 182 1.27e+01 b.1.1.1,b.1.1.3 19720,21659 2ny1B 184 1.27e+01 b.1.1.1,b.1.1.3 138764,138765 2qadB 181 1.28e+01 1cdyA 178 1.29e+01 b.1.1.1,b.1.1.3 19719,21658 1cdhA 178 1.29e+01 b.1.1.1,b.1.1.3 19722,21661 1cdiA 179 1.30e+01 b.1.1.1,b.1.1.3 19727,21666 2jqmA 112 1.31e+01 1qtyT 101 1.33e+01 1fltX b.1.1.4 21769 1cduA 178 1.34e+01 b.1.1.1,b.1.1.3 19723,21662 1rv6X 100 1.35e+01 b.1.1.4 97914 1fltX 95 1.36e+01 1fltX b.1.1.4 21765 1lxjA 104 1.36e+01 d.58.48.1 84736 2c4fT 75 1.44e+01 2cpzA 115 1.47e+01 d.58.7.1 130710 2gyaG 139 1.58e+01 2qamI 141 1.58e+01 1vs6I 142 1.58e+01 1tibA 269 1.71e+01 c.69.1.17 34738 1gt6A 269 1.73e+01 c.69.1.17 76342 3cbnA 151 1.77e+01 1xf1A 926 1.95e+01 1zrnA 232 2.33e+01 c.108.1.1 43323 1vk1A 242 2.35e+01 d.268.1.2 108634 1judA 232 2.45e+01 c.108.1.1 43325 2pd0A 223 2.55e+01 2z4dA 96 2.56e+01 1wadA 112 2.79e+01 a.138.1.1 19658 1sddB 647 3.01e+01 b.6.1.3,b.6.1.3,b.18.1.2,b.18.1.2 105433,105434,105435,105436 1wj2A 78 3.09e+01 g.79.1.1 114689 2genA 197 3.20e+01 a.4.1.9,a.121.1.1 135062,135063 2pnqA 467 3.25e+01 1j0tA 78 3.29e+01 a.163.1.1 77051 1fhfA 304 3.38e+01 1bgp a.93.1.1 18687 1h04P 125 3.44e+01 g.18.1.1,g.18.1.1 83415,83416 1qn0A 112 3.55e+01 3cyr a.138.1.1 19659 2gysA 419 3.57e+01 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1g3qA 237 3.75e+01 1hyqA c.37.1.10 60237 1dt2A 245 3.87e+01 b.47.1.1 76138 1y33I 64 3.96e+01 1v02E 565 3.97e+01 c.1.8.4 108198 2q5tA 642 4.02e+01 2e5vA 472 4.13e+01 1a4eA 488 4.39e+01 1cf9A e.5.1.1 42806 1ufgA 151 4.50e+01 b.1.16.1 107814 2hqhE 25 4.55e+01 1b3cA 64 4.60e+01 1aho g.3.7.1 44121 1a34A 159 4.60e+01 1a34A b.121.7.1 23286 2q0lA 311 4.61e+01 1pfzA 380 4.79e+01 1smrA b.50.1.2 26881 2gibA 103 4.95e+01 d.254.1.2 135225 1st8A 543 4.96e+01 2e2lA 334 4.99e+01 1lf2A 331 5.06e+01 b.50.1.2 77914 1xdhA 331 5.18e+01 b.50.1.2 121870 2cjrA 128 5.19e+01 1to2I 64 5.23e+01 d.40.1.1 112596 2cfxA 144 5.23e+01 a.4.5.32,d.58.4.2 130395,130396 2aezA 543 5.24e+01 1j2qA 237 5.28e+01 d.153.1.4 84029 2igxA 329 5.37e+01 b.50.1.2 137404 1ayjA 51 5.43e+01 g.3.7.5 44177 2d7vA 162 5.46e+01 1yeeL 219 5.58e+01 32c2A b.1.1.1,b.1.1.2 20156,21186 1ro5A 201 5.64e+01 d.108.1.3 105023 2di4A 238 5.65e+01 a.269.1.1 131522 1jdqA 98 5.73e+01 d.68.3.3 66559 2hu9A 130 5.77e+01 2bjuA 453 5.83e+01 b.50.1.2 128633 2jzaA 130 5.86e+01 2p0aA 344 6.08e+01 1z02A 446 6.11e+01 1azzA 226 6.13e+01 5ptp b.47.1.2 26072 3bbnD 201 6.23e+01 1tm5I 64 6.40e+01 d.40.1.1 112516 1xiwB 79 6.41e+01 b.1.1.4 115368 3bxjA 483 6.58e+01 1l1oC 181 6.68e+01 b.40.4.3 73480 1r5jA 337 6.73e+01 c.77.1.5 97097 2hftA 218 6.95e+01 b.1.2.1,b.1.2.1 21951,21952 1obfO 335 7.15e+01 c.2.1.3,d.81.1.1 86768,86769 1o2dA 371 7.20e+01 e.22.1.2 86591 1oaaA 259 7.25e+01 c.2.1.2 29829 1sepA 261 7.29e+01 c.2.1.2 29830 1vhdA 371 7.30e+01 e.22.1.2 100667 1gmzA 122 7.32e+01 a.133.1.2 65356 1ft9A 222 7.32e+01 1ft9A a.4.5.4,b.82.3.1 16107,28131 2aydA 76 7.41e+01 2pzoE 42 7.71e+01 1wioA 363 7.84e+01 1cdy b.1.1.1,b.1.1.1,b.1.1.3,b.1.1.3 19728,19729,21667,21668 1n19A 154 7.84e+01 b.1.8.1 79795 3bdnA 236 7.96e+01 1d0dA 60 7.99e+01 1kigI g.8.1.2 44566