# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3cbnA 151 3.39e-01 1kufA 203 3.37e+00 d.92.1.9 73007 2q4mA 217 3.74e+00 d.23.1.2 139870 2hqhE 25 3.90e+00 2rmpA 361 4.14e+00 2rmpA b.50.1.2 26825 1zxuA 217 4.20e+00 d.23.1.2 125796 2jgnA 185 5.36e+00 2i75A 320 5.39e+00 1danT 80 5.76e+00 1boy b.1.2.1 21953 1mfmA 153 5.95e+00 1mfmA b.1.8.1 22246 1kugA 203 6.46e+00 d.92.1.9 73008 1j8fA 323 7.75e+00 1j8fA c.31.1.5 62738 1wqbA 32 8.00e+00 1ft9A 222 8.32e+00 1ft9A a.4.5.4,b.82.3.1 16107,28131 2e27L 119 9.20e+00 2eb0A 307 1.15e+01 2vl7A 540 1.26e+01 1tmxA 293 1.37e+01 1mkeA 152 1.38e+01 b.55.1.4 79231 2pftA 571 1.38e+01 2ny1B 184 1.39e+01 b.1.1.1,b.1.1.3 138764,138765 2i5nM 323 1.51e+01 f.26.1.1 137067 6prcM 323 1.53e+01 6prcM f.26.1.1 43435 1j0tA 78 1.53e+01 a.163.1.1 77051 1vih 71 1.55e+01 1vih 2cfxA 144 1.55e+01 a.4.5.32,d.58.4.2 130395,130396 1ok8A 394 1.65e+01 b.1.18.4,f.10.1.1 93236,93237 1fmtA 314 1.77e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1dmhA 311 1.78e+01 1dmhA b.3.6.1 22633 1z6jT 211 1.89e+01 b.1.2.1,b.1.2.1 124527,124528 1hpwA 129 1.90e+01 1hpwA d.24.1.1 61118 1s35A 214 1.99e+01 a.7.1.1,a.7.1.1 98420,98421 1jj2A 239 2.02e+01 1rl2A b.34.5.3,b.40.4.5 63084,63085 2ebjA 192 2.10e+01 3biyA 380 2.10e+01 1qveA 126 2.12e+01 d.24.1.1 104594 2hu9A 130 2.14e+01 2uywA 130 2.25e+01 2r6hA 290 2.27e+01 1vazA 88 2.40e+01 d.245.1.1 100554 1jrhI 108 2.42e+01 1jrhI b.1.2.1 22059 1zuoA 186 2.47e+01 d.20.1.1 125680 1dhkB 223 2.47e+01 1led b.29.1.1 24157 1gwmA 153 2.48e+01 b.18.1.19 83348 1xsoA 150 2.57e+01 1mfmA b.1.8.1 22273 1tt8A 164 2.60e+01 d.190.1.1 112635 2b9uA 176 2.60e+01 1vkyA 347 2.65e+01 e.53.1.1 108696 2gysA 419 2.69e+01 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1adt 356 2.76e+01 1anv 1adtA 356 2.76e+01 a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1yp1A 202 2.91e+01 2pkhA 148 2.91e+01 1uc8A 280 3.04e+01 c.30.1.6,d.142.1.7 99165,99166 1ayjA 51 3.05e+01 g.3.7.5 44177 2pd0A 223 3.10e+01 1ecsA 126 3.14e+01 1ecsA d.32.1.2 59407 3besR 250 3.18e+01 1w6tA 444 3.21e+01 c.1.11.1,d.54.1.1 120670,120671 2ra8A 362 3.23e+01 1cdy 178 3.26e+01 1cdy 1ceuA 51 3.31e+01 1ceuA j.11.1.1 46137 1oaiA 59 3.34e+01 a.5.2.3 81255 2qgoA 141 3.52e+01 2fug7 129 3.52e+01 2rijA 387 3.59e+01 3ovoA 56 3.67e+01 g.68.1.1 44696 1vqoA 240 3.69e+01 b.34.5.3,b.40.4.5 120361,120362 1boy 219 3.70e+01 1boy 1d0dA 60 3.75e+01 1kigI g.8.1.2 44566 2bjbA 462 3.80e+01 1dnlA 199 3.83e+01 1ci0A b.45.1.1 25753 2vl6A 268 4.02e+01 1nrzA 164 4.10e+01 c.38.1.1 86131 1to4A 156 4.13e+01 b.1.8.1 107162 1o6sB 105 4.14e+01 b.1.6.1 81096 1g79A 218 4.26e+01 1ci0A b.45.1.1 25752 1je3A 97 4.27e+01 d.68.3.3 71637 3d0fA 106 4.66e+01 3bm4A 210 4.66e+01 2aj7A 163 4.69e+01 b.158.1.1 126842 1ju3A 583 4.79e+01 b.18.1.13,c.69.1.21 67300,67301 2z0tA 109 4.87e+01 1budA 197 4.89e+01 1atlA d.92.1.9 40328 2aydA 76 4.93e+01 2c6uA 122 5.02e+01 2hq9A 149 5.11e+01 b.45.1.1 136659 1cfyA 143 5.28e+01 1cof d.109.1.2 40858 2omzB 105 5.43e+01 1tkiA 321 5.52e+01 1tkiA d.144.1.7 41638 1ewjA 126 5.73e+01 1ecsA d.32.1.2 59526 1umdB 324 5.75e+01 c.36.1.7,c.48.1.2 99600,99601 2aexA 346 5.75e+01 2p0aA 344 5.77e+01 3brkX 420 5.77e+01 2hbwA 235 5.79e+01 1tetL 216 6.29e+01 32c2A b.1.1.1,b.1.1.2 19902,20996 1y8xA 160 6.29e+01 d.20.1.1 122769 1a4eA 488 6.31e+01 1cf9A e.5.1.1 42806 1rypH 205 6.45e+01 d.153.1.4 41876 1x3cA 73 6.50e+01 g.37.1.1 121660 2z73A 448 6.57e+01 2iihA 157 6.68e+01 1gz6A 319 6.69e+01 c.2.1.2 76410 2fr2A 172 6.73e+01 b.60.1.8 133963 1xxlA 239 6.86e+01 c.66.1.41 116203 1m7sA 484 6.87e+01 e.5.1.1 74574 1go5A 69 6.90e+01 a.5.2.3 65410 1esxA 96 6.92e+01 1esxA j.11.1.1 59501 1r94A 118 6.95e+01 b.124.1.1 97251 1q7sA 117 7.05e+01 c.131.1.1 96055 2fwhA 134 7.18e+01 c.47.1.1 134242 1q0eA 152 7.22e+01 b.1.8.1 95504 2dscA 212 7.24e+01 1mpuA 138 7.29e+01 d.169.1.1 85040 2d1pC 95 7.36e+01 c.114.1.2 131138 3bnwA 181 7.46e+01 1sy6A 204 7.47e+01 b.1.1.4,b.1.1.4 106111,106112 2yukA 90 7.60e+01 2v36B 193 7.81e+01 1viwB 198 7.83e+01 1led b.29.1.1 24170 1ixmA 192 7.94e+01 1ixmA d.123.1.1 41114