# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3cbnA 151 1.95e-01 1tmxA 293 2.40e-01 2hq9A 149 5.20e-01 b.45.1.1 136659 1ikpA 613 1.17e+00 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 2htiA 185 1.18e+00 b.45.1.1 136744 3cnqP 80 1.28e+00 1k47A 337 1.64e+00 d.14.1.5,d.58.26.4 72040,72041 1x6oA 174 2.72e+00 b.34.5.2,b.40.4.5 109493,109494 1aipA 405 3.05e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1i1nA 226 3.40e+00 c.66.1.7 71102 1y8xA 160 3.42e+00 d.20.1.1 122769 1zckA 154 3.61e+00 2pftA 571 3.62e+00 1d2eA 397 3.83e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2p0aA 344 3.83e+00 2ifsA 169 3.91e+00 1pa2A 306 4.45e+00 1bgp a.93.1.1 18693 1zxuA 217 4.53e+00 d.23.1.2 125796 1q7sA 117 4.62e+00 c.131.1.1 96055 1ifrA 121 4.75e+00 b.1.16.1 71203 2j69A 695 5.00e+00 2ra8A 362 5.00e+00 1rxdA 159 5.37e+00 c.45.1.1 111959 1dmhA 311 5.58e+00 1dmhA b.3.6.1 22633 1z8kA 193 5.76e+00 b.159.1.1 124703 1oohA 126 6.88e+00 a.39.2.1 93383 2pajA 492 7.33e+00 1dqpA 230 7.54e+00 1dqnA c.61.1.1 34069 2furA 209 7.59e+00 b.45.1.1 134185 1qgjA 300 8.08e+00 1bgp a.93.1.1 18691 1eu3A 210 8.62e+00 1an8 b.40.2.2,d.15.6.1 25206,37795 2vqeL 135 8.85e+00 1scjB 71 8.96e+00 1scjB d.58.3.2 39069 1mkeA 152 9.28e+00 b.55.1.4 79231 1auvA 311 9.39e+00 1auvA c.30.1.5,d.142.1.3 31723,41558 1zclA 180 9.50e+00 2gciA 360 9.57e+00 c.123.1.1 134983 1iz6A 138 9.60e+00 b.34.5.2,b.40.4.5 76976,76977 2q4mA 217 9.67e+00 d.23.1.2 139870 2c78A 405 9.89e+00 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1dqnA 230 9.92e+00 1dqnA c.61.1.1 34067 1gwuA 309 1.01e+01 a.93.1.1 83351 1w9aA 147 1.02e+01 b.45.1.1 114408 2bx2L 517 1.07e+01 1fo1A 271 1.07e+01 1fo1A c.10.2.3,d.58.7.2 30869,39213 2hsbA 126 1.10e+01 1s35A 214 1.15e+01 a.7.1.1,a.7.1.1 98420,98421 2brjA 188 1.15e+01 1x74A 360 1.16e+01 c.123.1.1 121771 2h5xA 196 1.24e+01 1g61A 228 1.25e+01 1g61A d.126.1.1 41126 1x24A 180 1.29e+01 1z5oA 242 1.33e+01 2jrrA 67 1.34e+01 1m4jA 142 1.39e+01 d.109.1.2 78602 1exmA 405 1.42e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2fg9A 178 1.42e+01 b.45.1.1 133426 7atjA 308 1.45e+01 1bgp a.93.1.1 18673 2b5gA 171 1.50e+01 d.108.1.1 127892 1cdy 178 1.55e+01 1cdy 3bfmA 235 1.58e+01 2oklA 185 1.67e+01 1yxlA 119 1.68e+01 a.133.1.2 124191 1kufA 203 1.72e+01 d.92.1.9 73007 1go4A 205 1.72e+01 d.135.1.1 70292 1z5nA 242 1.79e+01 1fjgL 135 1.81e+01 1fjfL b.40.4.5 25346 2cmzA 423 1.86e+01 2htdA 140 1.88e+01 1lqyA 184 1.89e+01 d.167.1.1 74212 1l7dA 384 1.95e+01 c.2.1.4,c.23.12.2 77774,77775 1i7nA 309 1.96e+01 c.30.1.5,d.142.1.3 83681,83682 3biyA 380 1.99e+01 2iw0A 254 2.05e+01 c.6.2.3 137737 2hxdA 204 2.06e+01 1han 297 2.11e+01 1han 1rlmA 271 2.12e+01 c.108.1.10 111860 2uubL 135 2.15e+01 b.40.4.5 139943 2hq7A 146 2.19e+01 b.45.1.1 136657 1kugA 203 2.20e+01 d.92.1.9 73008 3c9qA 205 2.21e+01 1kw3B 292 2.27e+01 d.32.1.3,d.32.1.3 77549,77550 2cw6A 298 2.30e+01 1ok8A 394 2.35e+01 b.1.18.4,f.10.1.1 93236,93237 1g62A 224 2.35e+01 1g61A d.126.1.1 41128 2eqxA 105 2.43e+01 2vacA 134 2.51e+01 2d7eA 105 2.53e+01 2hi6A 141 2.66e+01 c.8.2.3 136523 2ft0A 235 2.69e+01 1o4rA 108 2.70e+01 d.93.1.1 92469 1jysA 242 2.70e+01 c.56.2.1 77216 1lkdA 297 2.73e+01 d.32.1.3,d.32.1.3 78059,78060 1tk1A 260 2.74e+01 d.248.1.1 107066 2hf2A 283 2.85e+01 1qhlA 227 2.87e+01 1qhlA c.37.1.12 32382 1f97A 212 2.88e+01 1f97A b.1.1.1,b.1.1.4 19763,21764 1lm4A 194 2.96e+01 d.167.1.1 84626 1cx1A 153 2.96e+01 1ulo b.18.1.14 23770 2v36A 376 2.97e+01 3cqyA 370 3.06e+01 3bnwA 181 3.18e+01 1wzvA 155 3.18e+01 d.20.1.1 121529 2yyoA 171 3.20e+01 1avsA 90 3.29e+01 1cll a.39.1.5 17226 1u0tA 307 3.30e+01 e.52.1.1 107567 2vl6A 268 3.32e+01 1budA 197 3.34e+01 1atlA d.92.1.9 40328 1tib 269 3.41e+01 3tgl 1smxA 96 3.43e+01 b.40.4.5 105772 2axyA 73 3.52e+01 d.51.1.1 127532 1xbsA 149 3.55e+01 1l3aA 228 3.66e+01 d.18.1.2 73531 2z0tA 109 3.66e+01 1repC 251 3.71e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1vblA 416 3.73e+01 1lxjA 104 3.78e+01 d.58.48.1 84736 1t9fA 187 3.80e+01 b.42.6.1 106710 1eerB 227 3.83e+01 1eerB b.1.2.1,b.1.2.1 22011,22012 2oocA 113 3.90e+01 1o5uA 101 3.96e+01 b.82.1.8 92518 1rhcA 330 4.01e+01 c.1.16.3 97468 3ck6A 252 4.06e+01 2os0A 188 4.12e+01 1dbtA 239 4.12e+01 1dbtA c.1.2.3 28539 2pg9A 337 4.13e+01 2v6oA 596 4.27e+01 3cniA 156 4.30e+01 2jixB 225 4.32e+01 1thjA 214 4.51e+01 1qreA b.81.1.5 28072 2czqA 205 4.70e+01 1ydnA 295 4.71e+01 2ny1B 184 4.79e+01 b.1.1.1,b.1.1.3 138764,138765 2iabA 155 4.82e+01 2b1pA 355 4.85e+01 d.144.1.7 127672 1qvcA 145 4.87e+01 3ullA b.40.4.3 25284 2pe8A 105 4.94e+01 1om4A 422 4.95e+01 d.174.1.1 87067 2q3zA 687 4.98e+01 1tibA 269 5.00e+01 c.69.1.17 34738 2aq6A 147 5.00e+01 b.45.1.1 127156 2yz0A 138 5.11e+01 2yukA 90 5.27e+01 2j01P 150 5.34e+01 2fn9A 290 5.47e+01 2sakA 121 5.47e+01 d.15.5.1 37711 2sak 121 5.48e+01 2sak 1xccA 220 5.49e+01 c.47.1.10 115113 1r3eA 309 5.51e+01 b.122.1.1,d.265.1.2 96907,96908 1pmnA 364 5.58e+01 d.144.1.7 94907 2ewhA 98 5.59e+01 d.58.56.1 132466 2ccmA 191 5.60e+01 1yb2A 275 5.72e+01 c.66.1.13 122868 1pjcA 361 5.79e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1ex2A 189 5.82e+01 1ex2A c.51.4.2 33225 1ncwL 219 5.83e+01 b.1.1.1,b.1.1.2 85557,85558 2bzeA 153 5.93e+01 2o5nA 319 5.95e+01 2hkvA 149 5.99e+01 2hf9A 226 6.01e+01 1q7eA 428 6.04e+01 c.123.1.1 96035 1guzA 310 6.11e+01 c.2.1.5,d.162.1.1 65586,65587 2icjA 233 6.12e+01 2qwuA 211 6.21e+01 2yyhA 139 6.22e+01 1fzyA 149 6.25e+01 d.20.1.1 65072 1wimA 94 6.28e+01 g.44.1.1 114677 1gt6A 269 6.35e+01 c.69.1.17 76342 2fxaA 207 6.37e+01 a.4.5.28 134304 2fliA 220 6.48e+01 c.1.2.2 133714 2jgnA 185 6.66e+01 1g7sA 594 6.68e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1mc0A 368 6.69e+01 d.110.2.1,d.110.2.1 78937,78938 1ktbA 405 6.69e+01 b.71.1.1,c.1.8.1 72960,72961 1zc1A 208 6.71e+01 1wthD 391 6.83e+01 b.106.1.1,b.106.1.1 121268,121269 1vkuA 100 6.84e+01 a.28.1.1 108690 1j5uA 136 6.86e+01 d.208.1.1 71584 1aohA 147 6.86e+01 1aohA b.2.2.2 22401 1nrzA 164 6.89e+01 c.38.1.1 86131 1pt7A 437 7.03e+01 c.123.1.1 95093 2jaeA 489 7.08e+01 2oo4A 234 7.10e+01 2olpA 152 7.16e+01 1cb8A 678 7.18e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1qvbA 481 7.19e+01 1qvbA c.1.8.4 28983 1qreA 247 7.32e+01 1qreA b.81.1.5 28066 1ir6A 424 7.37e+01 c.107.1.2 71342 7ahlA 293 7.47e+01 7ahlA f.6.1.1 43812 2px7A 236 7.49e+01 1f08A 148 7.50e+01 1f08A d.89.1.2 59564 2hqhE 25 7.53e+01 1m9zA 111 7.63e+01 g.7.1.3 78881 2dyuA 334 7.65e+01 2ebjA 192 7.71e+01 1bkb 136 7.73e+01 1bkb 1udmA 149 7.74e+01 d.109.1.2 107780 2i3dA 249 7.74e+01 1b3bA 415 7.77e+01 1hwyA c.2.1.7,c.58.1.1 30244,33892 3brkX 420 7.82e+01 1dcjA 81 7.88e+01 1dcjA d.68.3.3 59115 2f4lA 297 7.93e+01 b.23.3.1 132927 1yllA 200 7.93e+01 b.82.1.17 123653 1sphA 88 7.98e+01 1ptf d.94.1.1 40544