# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3cbnA 151 1.09e+00 1tmxA 293 2.56e+00 1x6oA 174 2.91e+00 b.34.5.2,b.40.4.5 109493,109494 1qfjA 232 3.36e+00 1qfjA b.43.4.2,c.25.1.1 25655,31545 2f4wA 187 3.64e+00 d.20.1.1 132958 1obfO 335 4.19e+00 c.2.1.3,d.81.1.1 86768,86769 1wzvA 155 5.92e+00 d.20.1.1 121529 1ikpA 613 6.64e+00 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 2z00A 426 6.83e+00 1iz6A 138 6.98e+00 b.34.5.2,b.40.4.5 76976,76977 2gciA 360 7.16e+00 c.123.1.1 134983 1x74A 360 7.20e+00 c.123.1.1 121771 3c3dA 311 7.97e+00 2jo6A 113 9.08e+00 2c78A 405 9.12e+00 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1bkb 136 9.40e+00 1bkb 1bkbA 136 9.40e+00 b.34.5.2,b.40.4.5 24609,25341 1cdy 178 9.70e+00 1cdy 1aipA 405 9.95e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1q0rA 298 1.01e+01 c.69.1.28 95508 2hf2A 283 1.05e+01 2o20A 332 1.06e+01 1exmA 405 1.12e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1mkeA 152 1.24e+01 b.55.1.4 79231 3bxoA 239 1.27e+01 1lqyA 184 1.27e+01 d.167.1.1 74212 1kgdA 180 1.29e+01 c.37.1.1 68582 1rloA 271 1.29e+01 c.108.1.10 111864 2ny1B 184 1.43e+01 b.1.1.1,b.1.1.3 138764,138765 1jjfA 268 1.44e+01 c.69.1.2 66765 2ftwA 521 1.68e+01 b.92.1.3,c.1.9.6 134083,134084 1d2eA 397 1.68e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 3cnqP 80 1.81e+01 1fzyA 149 1.83e+01 d.20.1.1 65072 3b77A 193 1.83e+01 1sppB 116 1.90e+01 1sfp b.23.1.1 23897 2fliA 220 1.91e+01 c.1.2.2 133714 2uxyA 341 1.93e+01 3bxpA 277 1.93e+01 2ifsA 169 1.94e+01 2ahuA 531 2.00e+01 c.124.1.3,c.124.1.2 126785,126786 1n6aA 259 2.00e+01 b.76.2.1,b.85.7.1 80121,80122 2yyoA 171 2.06e+01 2ffeA 311 2.06e+01 c.143.1.1 133381 1bmv1 198 2.06e+01 1bmv1 1ucyH 150 2.12e+01 1ucyH 2uubL 135 2.12e+01 b.40.4.5 139943 1pgl1 185 2.24e+01 1g13A 162 2.28e+01 1g13A b.95.1.1 60194 2f69A 261 2.29e+01 b.76.2.1,b.85.7.1 133035,133036 3bmzA 199 2.33e+01 1z8kA 193 2.33e+01 b.159.1.1 124703 2qklA 127 2.36e+01 2brjA 188 2.37e+01 1ex2A 189 2.38e+01 1ex2A c.51.4.2 33225 2ag4A 164 2.40e+01 b.95.1.1 126717 1iu8A 206 2.41e+01 c.56.4.1 71436 1u7iA 136 2.55e+01 d.32.1.7 107724 1h09A 338 2.56e+01 b.109.1.1,c.1.8.8 83420,83421 2pvaA 345 2.61e+01 3pvaA d.153.1.3 41850 3c0fB 91 2.63e+01 2ag9A 164 2.65e+01 1fjgL 135 2.66e+01 1fjfL b.40.4.5 25346 1dlfL 113 2.68e+01 8fabA b.1.1.1 20382 2j8gA 339 2.69e+01 1z9vA 121 2.74e+01 1thjA 214 2.75e+01 1qreA b.81.1.5 28072 2oklA 185 2.79e+01 2bx2L 517 2.80e+01 2b4rO 345 2.83e+01 c.2.1.3,d.81.1.1 127845,127846 2atzA 180 3.02e+01 d.264.1.3 127317 2j59M 168 3.06e+01 2idaA 102 3.09e+01 3c1mA 473 3.14e+01 2db9A 149 3.24e+01 2yydA 345 3.27e+01 2zodA 345 3.27e+01 1khiA 176 3.46e+01 b.34.5.2,b.40.4.5 77408,77409 1pm4A 119 3.54e+01 b.135.1.1 94891 3bilA 348 3.56e+01 1iwmA 186 3.59e+01 b.125.1.2 83758 1dlcA 584 3.71e+01 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1rlmA 271 3.79e+01 c.108.1.10 111860 2eifA 136 3.79e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1xf1A 926 3.82e+01 2fhxA 246 3.83e+01 1dmhA 311 3.98e+01 1dmhA b.3.6.1 22633 1xcrA 316 4.00e+01 d.290.1.2 121860 2cmuA 342 4.02e+01 2bylA 439 4.02e+01 c.67.1.4 129490 1o4rA 108 4.04e+01 d.93.1.1 92469 2nptB 100 4.04e+01 d.15.2.2 138449 1ylhA 560 4.09e+01 1lm4A 194 4.32e+01 d.167.1.1 84626 1qreA 247 4.34e+01 1qreA b.81.1.5 28066 2olrA 540 4.40e+01 c.91.1.1,c.109.1.1 139140,139141 3cswA 285 4.41e+01 1o7dD 282 4.47e+01 1m1hA 248 4.50e+01 b.114.1.1,d.58.42.1 78415,78416 1hh1A 143 4.53e+01 1gefA c.52.1.18 61036 1e5pA 151 4.61e+01 1bj7 b.60.1.1 59272 1h1yA 228 4.74e+01 c.1.2.2 76506 1pfsA 78 4.87e+01 1pfsA b.40.4.7 25391 2j5zA 221 4.92e+01 1vpvA 300 4.93e+01 c.119.1.1 113975 2ahnA 222 4.95e+01 2e4sA 189 4.99e+01 1w1iE 357 5.04e+01 c.1.9.1 109051 1tluA 130 5.17e+01 d.156.1.2 107139 1o5uA 101 5.21e+01 b.82.1.8 92518 1txyA 104 5.25e+01 b.40.4.3 112791 1ii2A 524 5.27e+01 c.91.1.1,c.109.1.1 66146,66147 2co7B 221 5.37e+01 1tvnA 293 5.46e+01 c.1.8.3 119360 1y0yA 353 5.50e+01 b.49.3.1,c.56.5.4 122514,122515 1oatA 439 5.52e+01 2dkb c.67.1.4 34461 2aqjA 538 5.57e+01 1qftA 175 5.62e+01 1qftA b.60.1.1 27151 1kcxA 518 5.62e+01 b.92.1.3,c.1.9.6 90953,90954 1ru0A 105 5.63e+01 d.74.1.1 111937 3b9eA 584 5.67e+01 2o5nA 319 5.71e+01 1z2uA 150 5.77e+01 d.20.1.1 124389 2bvrH 252 5.84e+01 3pvaA 335 5.85e+01 3pvaA d.153.1.3 41854 2d9rA 104 5.94e+01 b.129.2.1 131350 1cb8A 678 5.94e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1q7hA 153 5.95e+01 b.122.1.1,d.17.6.2 96042,96043 1mc0A 368 5.96e+01 d.110.2.1,d.110.2.1 78937,78938 2nytA 190 6.02e+01 1kbvA 327 6.09e+01 b.6.1.3,b.6.1.3 68395,68396 2awfA 172 6.12e+01 d.20.1.1 127432 1rd5A 262 6.24e+01 c.1.2.4 111772 1wexA 104 6.29e+01 d.58.7.1 114568 1fkx 349 6.31e+01 1a4mA 1z7dA 433 6.52e+01 c.67.1.4 124600 1x3cA 73 6.55e+01 g.37.1.1 121660 1vflA 356 6.70e+01 c.1.9.1 120041 1y8xA 160 6.78e+01 d.20.1.1 122769 1u4nA 310 6.85e+01 c.69.1.2 113021 1ygyA 529 6.85e+01 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2d0eA 407 6.88e+01 2qs8A 418 6.91e+01 1xccA 220 6.92e+01 c.47.1.10 115113 1bw0A 416 7.01e+01 1bw0A c.67.1.1 34385 2r6hA 290 7.10e+01 2oatA 439 7.10e+01 2dkb c.67.1.4 34452 3ullA 132 7.16e+01 3ullA b.40.4.3 25282 2ywnA 157 7.22e+01 2jigA 224 7.25e+01 1q3eA 207 7.37e+01 b.82.3.2 95669 1x23A 155 7.37e+01 d.20.1.1 121615 2p3uB 233 7.40e+01 1aboA 62 7.43e+01 1bbzA b.34.2.1 24474 1cq3A 233 7.44e+01 1cq3A b.27.1.1 23923 1m2kA 249 7.51e+01 c.31.1.5 84754 1ush 550 7.56e+01 1ush 2bgiA 272 7.58e+01 1w44A 331 7.59e+01 c.37.1.11 114147 2byjA 439 7.63e+01 c.67.1.4 129483 2d09A 407 7.65e+01 3b3qE 197 7.72e+01 1vzqH 250 7.74e+01 1ss4A 153 7.74e+01 d.32.1.6 105976 2fo3A 125 7.84e+01 d.20.1.1 133868 1xbsA 149 7.84e+01 2cf8H 257 7.90e+01 2hq9A 149 7.93e+01 b.45.1.1 136659 2eceA 462 7.96e+01 2a13A 166 7.99e+01 b.60.1.8 125971 2q4nA 166 7.99e+01 b.60.1.8 139871