# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3cbnA 151 3.99e-02 1tmxA 293 1.99e-01 1n6aA 259 4.37e-01 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 5.30e-01 b.76.2.1,b.85.7.1 133035,133036 2ny1B 184 7.77e-01 b.1.1.1,b.1.1.3 138764,138765 2uxyA 341 1.64e+00 1qfjA 232 1.75e+00 1qfjA b.43.4.2,c.25.1.1 25655,31545 1bkb 136 1.88e+00 1bkb 1bkbA 136 1.88e+00 b.34.5.2,b.40.4.5 24609,25341 1x6oA 174 2.45e+00 b.34.5.2,b.40.4.5 109493,109494 2hf2A 283 2.53e+00 1aipA 405 2.73e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2c78A 405 2.75e+00 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1exmA 405 3.03e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2ie2A 222 3.13e+00 2f4wA 187 3.18e+00 d.20.1.1 132958 1ikpA 613 3.32e+00 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1d2eA 397 3.41e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1xssA 225 3.56e+00 2qklA 127 3.60e+00 2fliA 220 3.61e+00 c.1.2.2 133714 2o20A 332 3.62e+00 2dddA 225 4.22e+00 1iz6A 138 4.30e+00 b.34.5.2,b.40.4.5 76976,76977 2ahuA 531 4.41e+00 c.124.1.3,c.124.1.2 126785,126786 3cnqP 80 4.50e+00 1sppB 116 4.63e+00 1sfp b.23.1.1 23897 1xf1A 926 4.96e+00 1cdy 178 5.12e+00 1cdy 1m1hA 248 5.15e+00 b.114.1.1,d.58.42.1 78415,78416 3bxoA 239 5.33e+00 1e5pA 151 5.67e+00 1bj7 b.60.1.1 59272 1dar 691 5.68e+00 1dar 1fjgL 135 6.16e+00 1fjfL b.40.4.5 25346 2uubL 135 6.20e+00 b.40.4.5 139943 1iu8A 206 6.28e+00 c.56.4.1 71436 2ifsA 169 6.31e+00 1thjA 214 6.49e+00 1qreA b.81.1.5 28072 1iwmA 186 6.55e+00 b.125.1.2 83758 1pm4A 119 6.57e+00 b.135.1.1 94891 1pfsA 78 6.69e+00 1pfsA b.40.4.7 25391 1mkeA 152 6.81e+00 b.55.1.4 79231 2jo6A 113 6.96e+00 2ag9A 164 7.26e+00 1h1yA 228 7.66e+00 c.1.2.2 76506 2ag4A 164 7.80e+00 b.95.1.1 126717 1o5uA 101 7.85e+00 b.82.1.8 92518 2d9rA 104 8.34e+00 b.129.2.1 131350 1x74A 360 8.35e+00 c.123.1.1 121771 2gciA 360 8.48e+00 c.123.1.1 134983 2ftwA 521 8.65e+00 b.92.1.3,c.1.9.6 134083,134084 1rloA 271 9.00e+00 c.108.1.10 111864 1g13A 162 9.01e+00 1g13A b.95.1.1 60194 1obfO 335 9.12e+00 c.2.1.3,d.81.1.1 86768,86769 1ush 550 9.17e+00 1ush 3c0fB 91 1.00e+01 2q4nA 166 1.01e+01 b.60.1.8 139871 1ex2A 189 1.01e+01 1ex2A c.51.4.2 33225 2co7B 221 1.02e+01 2a13A 166 1.04e+01 b.60.1.8 125971 1o4rA 108 1.06e+01 d.93.1.1 92469 1qftA 175 1.07e+01 1qftA b.60.1.1 27151 1n9lA 109 1.09e+01 d.110.3.6 85468 2fn9A 290 1.09e+01 2v3mA 131 1.15e+01 2hzqA 174 1.18e+01 1wk8A 194 1.29e+01 2atzA 180 1.30e+01 d.264.1.3 127317 1qreA 247 1.36e+01 1qreA b.81.1.5 28066 3cswA 285 1.38e+01 2dyuA 334 1.39e+01 1zuxA 224 1.41e+01 2bmwA 304 1.45e+01 b.43.4.2,c.25.1.1 128815,128816 2z00A 426 1.47e+01 2b4rO 345 1.48e+01 c.2.1.3,d.81.1.1 127845,127846 1ixmA 192 1.57e+01 1ixmA d.123.1.1 41114 1rlmA 271 1.58e+01 c.108.1.10 111860 1wexA 104 1.60e+01 d.58.7.1 114568 1bmv1 198 1.61e+01 1bmv1 1u7iA 136 1.65e+01 d.32.1.7 107724 1udzA 182 1.67e+01 b.51.1.1 99239 1xaoA 121 1.71e+01 2p4mA 219 1.75e+01 1dlcA 584 1.76e+01 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1khiA 176 1.83e+01 b.34.5.2,b.40.4.5 77408,77409 1fa8A 135 1.85e+01 1qipA d.32.1.1 38486 1ogiA 303 1.85e+01 b.43.4.2,c.25.1.1 92914,92915 1pgl1 185 1.85e+01 1fzyA 149 1.86e+01 d.20.1.1 65072 1xtoA 311 1.86e+01 d.157.1.6 116030 1txyA 104 1.92e+01 b.40.4.3 112791 2p9rA 102 1.92e+01 1dlfL 113 1.94e+01 8fabA b.1.1.1 20382 1ymzA 43 1.96e+01 2dg1A 333 1.99e+01 b.68.6.1 131493 2j8gA 339 2.00e+01 1ywhA 313 2.01e+01 2cmuA 342 2.03e+01 1wnyA 186 2.04e+01 1usrA 454 2.18e+01 b.68.1.1 99881 1f9zA 135 2.21e+01 1qipA d.32.1.1 38484 1wz3A 96 2.21e+01 d.15.1.7 121478 2ywnA 157 2.30e+01 1cq3A 233 2.30e+01 1cq3A b.27.1.1 23923 2jigA 224 2.35e+01 1w34A 304 2.43e+01 b.43.4.2,c.25.1.1 120620,120621 2fo3A 125 2.46e+01 d.20.1.1 133868 2yyoA 171 2.46e+01 1t9fA 187 2.55e+01 b.42.6.1 106710 2awfA 172 2.56e+01 d.20.1.1 127432 2bsaA 303 2.57e+01 b.43.4.2,c.25.1.1 129078,129079 3c1mA 473 2.60e+01 1rd5A 262 2.62e+01 c.1.2.4 111772 1q0rA 298 2.62e+01 c.69.1.28 95508 2ahnA 222 2.63e+01 1xccA 220 2.68e+01 c.47.1.10 115113 1shdA 107 2.70e+01 1fmk d.93.1.1 40440 3hhrB 203 2.72e+01 1axiB b.1.2.1,b.1.2.1 22005,22006 2bm0A 691 2.76e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 3b77A 193 2.86e+01 2ad6A 571 2.92e+01 b.70.1.1 126568 1ru0A 105 2.92e+01 d.74.1.1 111937 2fepA 289 2.99e+01 2e4sA 189 3.00e+01 2nqcA 138 3.01e+01 1a22B 238 3.02e+01 1axiB b.1.2.1,b.1.2.1 22003,22004 1go2A 304 3.03e+01 b.43.4.2,c.25.1.1 76243,76244 2o5nA 319 3.08e+01 1tp9A 162 3.18e+01 c.47.1.10 119306 1b77A 228 3.19e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1h09A 338 3.20e+01 b.109.1.1,c.1.8.8 83420,83421 1uzxA 169 3.22e+01 d.20.1.2 100238 2ft0A 235 3.30e+01 1z4vA 532 3.32e+01 2pzeA 229 3.33e+01 2db9A 149 3.33e+01 2v43A 303 3.34e+01 2higA 487 3.37e+01 2z1aA 552 3.43e+01 1exg 110 3.43e+01 1exg 2r0hA 164 3.44e+01 2eifA 136 3.47e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1qz8A 113 3.50e+01 b.140.1.1 96619 1x67A 146 3.51e+01 3ullA 132 3.53e+01 3ullA b.40.4.3 25282 1xbsA 149 3.56e+01 1vr3A 191 3.64e+01 b.82.1.6 120431 2j59M 168 3.68e+01 2v6oA 596 3.68e+01 1scjB 71 3.78e+01 1scjB d.58.3.2 39069 2hq9A 149 3.79e+01 b.45.1.1 136659 1ybdA 239 3.80e+01 c.73.1.3 122884 2o8lA 274 3.86e+01 b.47.1.1 138932 1ihjA 98 3.86e+01 1pdr b.36.1.1 62382 1ss4A 153 3.86e+01 d.32.1.6 105976 1w6tA 444 3.87e+01 c.1.11.1,d.54.1.1 120670,120671 1j6wA 175 3.89e+01 1j98A d.185.1.2 62663 1y0yA 353 3.90e+01 b.49.3.1,c.56.5.4 122514,122515 1kcxA 518 3.96e+01 b.92.1.3,c.1.9.6 90953,90954 1ue1A 164 3.99e+01 b.40.4.3 99243 1wosA 364 4.06e+01 b.44.2.1,d.250.1.1 109468,109469 2nptB 100 4.07e+01 d.15.2.2 138449 1z8kA 193 4.09e+01 b.159.1.1 124703 1o7dD 282 4.10e+01 2d0eA 407 4.11e+01 2brjA 188 4.11e+01 3czbA 351 4.23e+01 1ifrA 121 4.23e+01 b.1.16.1 71203 1jjfA 268 4.23e+01 c.69.1.2 66765 2in0A 139 4.24e+01 1vrbA 342 4.24e+01 b.82.2.11 120450 1f2qA 176 4.27e+01 2fcbA b.1.1.4,b.1.1.4 21789,21790 1jmsA 381 4.28e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1pzsA 208 4.33e+01 b.1.8.1 104397 2z3zA 706 4.48e+01 2p9bA 458 4.60e+01 3bo5A 290 4.62e+01 1bw0A 416 4.63e+01 1bw0A c.67.1.1 34385 3c99A 432 4.70e+01 1obpA 159 4.71e+01 1obpA b.60.1.1 27092 2bzeA 153 4.74e+01 2cbzA 237 4.74e+01 2gw4B 162 4.75e+01 2gw3A 225 4.75e+01 1oatA 439 4.80e+01 2dkb c.67.1.4 34461 2yweA 600 4.82e+01 2vhjA 331 4.85e+01 2id4A 503 4.87e+01 b.18.1.20,c.41.1.1 137265,137266 1vi4A 174 4.89e+01 c.8.7.1 100731 2j5uA 255 4.94e+01 1dmhA 311 4.97e+01 1dmhA b.3.6.1 22633 2orwA 184 4.98e+01 2o4uX 334 4.99e+01 3bmzA 199 5.02e+01 1r64A 481 5.03e+01 b.18.1.20,c.41.1.1 97140,97141 1x12A 208 5.03e+01 3cmgA 667 5.04e+01 1h0bA 256 5.05e+01 b.29.1.11 83422 1ucyH 150 5.09e+01 1ucyH 2qggA 182 5.09e+01 2fhxA 246 5.11e+01 2bibA 547 5.11e+01 b.109.1.1,d.157.1.8 128581,128582 1vlwA 217 5.12e+01 c.1.10.1 108868 2ek8A 421 5.15e+01 1hp1A 516 5.17e+01 d.114.1.1,d.159.1.2 70976,70977 2qzjA 136 5.19e+01 2bvrH 252 5.19e+01 2bw8A 227 5.21e+01 b.29.1.11 129324 2bgiA 272 5.24e+01 1wzvA 155 5.25e+01 d.20.1.1 121529 2b79A 144 5.28e+01 2r6hA 290 5.32e+01 1gt1A 159 5.35e+01 b.60.1.1 90515 3cniA 156 5.36e+01 1smxA 96 5.36e+01 b.40.4.5 105772 1a8vA 121 5.41e+01 1a62 a.140.3.1,b.40.4.5 64712,64713 2i9dA 217 5.42e+01 1wmmA 145 5.42e+01 b.122.1.8 121049 1rwiA 270 5.44e+01 b.68.9.1 97987 2gzqA 200 5.44e+01 1q7hA 153 5.45e+01 b.122.1.1,d.17.6.2 96042,96043 2fe5A 94 5.45e+01 b.36.1.1 133323 2oklA 185 5.50e+01 2yydA 345 5.53e+01 2zodA 345 5.53e+01 1lqyA 184 5.54e+01 d.167.1.1 74212 2q9vA 90 5.55e+01 3bilA 348 5.56e+01 1vpvA 300 5.56e+01 c.119.1.1 113975 2d5lA 706 5.58e+01 1h2wA 710 5.61e+01 b.69.7.1,c.69.1.4 76596,76597 2ofcA 142 5.63e+01 1a04A 215 5.66e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1s1fA 406 5.66e+01 a.104.1.1 112008 1x3cA 73 5.66e+01 g.37.1.1 121660 2vgiA 528 5.68e+01 1zh8A 340 5.68e+01 c.2.1.3,d.81.1.5 125077,125078 1eejA 216 5.71e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 2e4tA 519 5.72e+01 1u79A 129 5.77e+01 d.26.1.1 107714 1o7dC 159 5.78e+01 b.30.5.6 86640 1pysA 350 5.79e+01 1pysA d.104.1.1 40775 2q0zX 339 5.83e+01 2g23A 612 5.85e+01 2d09A 407 5.87e+01 2qlcA 126 5.94e+01 1wa3A 205 5.97e+01 c.1.10.1 120802 1uisA 231 5.97e+01 d.22.1.1 99431 1x3eA 165 5.98e+01 1l3aA 228 6.01e+01 d.18.1.2 73531 2bepA 159 6.04e+01 d.20.1.1 128385 1mdaH 368 6.19e+01 2bbkH b.69.2.1 27637 2bylA 439 6.20e+01 c.67.1.4 129490 2p3xA 339 6.22e+01 1dzkA 157 6.23e+01 1obpA b.60.1.1 27096 1o6gA 710 6.30e+01 b.69.7.1,c.69.1.4 81087,81088 1tqjA 230 6.31e+01 c.1.2.2 107228 2hlvA 160 6.32e+01 1z2uA 150 6.44e+01 d.20.1.1 124389 1w44A 331 6.49e+01 c.37.1.11 114147 1ik9A 213 6.55e+01 b.59.1.1,h.1.11.1 66176,66177 1ecfA 504 6.56e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 2o4cA 380 6.56e+01 2aukA 190 6.57e+01 1qfmA 710 6.67e+01 1qfmA b.69.7.1,c.69.1.4 27673,34641 2hd9A 145 6.72e+01 1yllA 200 6.77e+01 b.82.1.17 123653 2gsjA 271 6.78e+01 2b7fA 116 6.79e+01 2f4pA 147 6.80e+01 b.82.1.9 132933 1d3bA 75 6.80e+01 1d3bA b.38.1.1 24798 1xfoA 357 6.84e+01 b.49.3.1,c.56.5.4 115265,115266 2gzsA 278 6.87e+01 1pg6A 243 6.99e+01 b.82.5.2 94673 1eerB 227 7.02e+01 1eerB b.1.2.1,b.1.2.1 22011,22012 1e79H 146 7.03e+01 1e79H a.2.10.1,b.93.1.1 15721,28438 2qs8A 418 7.03e+01 1quqB 121 7.06e+01 1quqB b.40.4.3 25305 2c9jA 223 7.16e+01 2ebjA 192 7.16e+01 1tluA 130 7.21e+01 d.156.1.2 107139 1y8cA 246 7.22e+01 c.66.1.43 116563 2j01P 150 7.23e+01 3bxpA 277 7.25e+01 2oatA 439 7.25e+01 2dkb c.67.1.4 34452 2e5vA 472 7.26e+01 1tqxA 227 7.27e+01 c.1.2.2 112614 1pv5A 264 7.33e+01 d.251.1.1 95150 2gy5A 423 7.34e+01 1o12A 376 7.35e+01 b.92.1.5,c.1.9.10 80758,80759 2eklA 313 7.35e+01 2bolA 314 7.35e+01 3c5xA 402 7.41e+01 1k47A 337 7.43e+01 d.14.1.5,d.58.26.4 72040,72041 1cqxA 403 7.45e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 2i8lA 156 7.48e+01 1kgdA 180 7.49e+01 c.37.1.1 68582 1to2I 64 7.51e+01 d.40.1.1 112596 2fauA 341 7.51e+01 1am2 199 7.58e+01 1am2 1am2A 199 7.58e+01 b.86.1.2 28381 1whi 122 7.59e+01 1whi 1whiA 122 7.59e+01 b.39.1.1 24810 2i02A 148 7.63e+01 b.45.1.1 136936 2pi2E 142 7.64e+01 1fnc 314 7.66e+01 1fnc 1ylhA 560 7.68e+01 1ncwL 219 7.69e+01 b.1.1.1,b.1.1.2 85557,85558 1v0aA 178 7.70e+01 b.18.1.30 119815 2hjqA 111 7.76e+01 1rl5A 60 7.79e+01 2k0qA 74 7.82e+01 1namB 113 7.82e+01 b.1.1.1 85489 1ile 821 7.85e+01 1ile 1h3fA 432 7.92e+01 c.26.1.1,d.66.1.4 76631,76632 2qk0A 74 7.95e+01