# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3cbnA 151 4.01e-01 1g7sA 594 2.47e+00 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 2ra8A 362 3.94e+00 2hq9A 149 4.39e+00 b.45.1.1 136659 1ne2A 200 4.95e+00 c.66.1.32 85586 1rhcA 330 6.40e+00 c.1.16.3 97468 1dhkB 223 7.00e+00 1led b.29.1.1 24157 2ft0A 235 7.30e+00 1dmhA 311 7.67e+00 1dmhA b.3.6.1 22633 3c9qA 205 8.57e+00 2qwuA 211 8.66e+00 2q4mA 217 9.48e+00 d.23.1.2 139870 1kugA 203 1.02e+01 d.92.1.9 73008 1mkeA 152 1.05e+01 b.55.1.4 79231 1kufA 203 1.07e+01 d.92.1.9 73007 1k47A 337 1.08e+01 d.14.1.5,d.58.26.4 72040,72041 2brjA 188 1.09e+01 1q7sA 117 1.13e+01 c.131.1.1 96055 3biyA 380 1.14e+01 1zc1A 208 1.15e+01 1exg 110 1.19e+01 1exg 1x74A 360 1.21e+01 c.123.1.1 121771 2b5gA 171 1.23e+01 d.108.1.1 127892 1zxuA 217 1.29e+01 d.23.1.2 125796 1z8kA 193 1.33e+01 b.159.1.1 124703 2j8gA 339 1.36e+01 1h09A 338 1.48e+01 b.109.1.1,c.1.8.8 83420,83421 1xbsA 149 1.56e+01 1w6tA 444 1.57e+01 c.1.11.1,d.54.1.1 120670,120671 2pg9A 337 1.58e+01 2pftA 571 1.60e+01 1i8nA 126 1.74e+01 1i8nA g.10.1.2 61976 3bwgA 239 1.76e+01 2gciA 360 1.78e+01 c.123.1.1 134983 1y8xA 160 1.94e+01 d.20.1.1 122769 2yy8A 201 1.94e+01 2jgnA 185 1.98e+01 2ifsA 169 2.00e+01 2czqA 205 2.00e+01 2hkvA 149 2.14e+01 1budA 197 2.17e+01 1atlA d.92.1.9 40328 2j69A 695 2.31e+01 1zckA 154 2.31e+01 1nrkA 328 2.34e+01 b.44.2.1,d.250.1.1 92089,92090 2hldG 278 2.40e+01 1tmxA 293 2.54e+01 2eqxA 105 2.55e+01 1tetL 216 2.56e+01 32c2A b.1.1.1,b.1.1.2 19902,20996 1rxdA 159 2.69e+01 c.45.1.1 111959 1ttuA 477 2.79e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 2qf7A 1165 2.81e+01 1cx1A 153 2.82e+01 1ulo b.18.1.14 23770 1aipA 405 2.88e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1b9xC 246 2.96e+01 1b9yC c.47.1.6 33053 1lqyA 184 3.20e+01 d.167.1.1 74212 2r6hA 290 3.23e+01 1lm4A 194 3.25e+01 d.167.1.1 84626 2fmyA 220 3.26e+01 3beoA 375 3.30e+01 1o4rA 108 3.33e+01 d.93.1.1 92469 1rc9A 221 3.35e+01 d.111.1.1,g.19.1.2 111765,111766 2f4lA 297 3.44e+01 b.23.3.1 132927 2p0aA 344 3.48e+01 3baeL 218 3.59e+01 1m9zA 111 3.60e+01 g.7.1.3 78881 1s2dA 167 3.72e+01 c.23.14.1 98377 2oklA 185 3.72e+01 2iabA 155 3.81e+01 1a5zA 319 4.03e+01 c.2.1.5,d.162.1.1 30181,42148 3b8fA 142 4.07e+01 1bkb 136 4.15e+01 1bkb 1bkbA 136 4.15e+01 b.34.5.2,b.40.4.5 24609,25341 1rypH 205 4.17e+01 d.153.1.4 41876 1go4A 205 4.19e+01 d.135.1.1 70292 2j01Q 141 4.29e+01 1bvoA 175 4.32e+01 1a3qA b.2.5.3 22457 1w94A 156 4.37e+01 c.51.1.2 120774 1m1fA 110 4.41e+01 b.34.6.2 78401 1ifrA 121 4.44e+01 b.1.16.1 71203 1j5uA 136 4.55e+01 d.208.1.1 71584 1x31C 206 4.70e+01 1smxA 96 4.78e+01 b.40.4.5 105772 2nwfA 141 4.83e+01 1dqnA 230 4.85e+01 1dqnA c.61.1.1 34067 3c8nA 356 5.07e+01 1ncwL 219 5.16e+01 b.1.1.1,b.1.1.2 85557,85558 1dbtA 239 5.20e+01 1dbtA c.1.2.3 28539 2b9lA 394 5.21e+01 2e85A 159 5.35e+01 1zrrA 179 5.36e+01 b.82.1.6 125555 1x6oA 174 5.44e+01 b.34.5.2,b.40.4.5 109493,109494 1vk6A 269 5.47e+01 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1oohA 126 5.57e+01 a.39.2.1 93383 1x67A 146 5.75e+01 1dlfL 113 5.76e+01 8fabA b.1.1.1 20382 2df8A 325 5.91e+01 2cmzA 423 5.97e+01 2yz0A 138 6.02e+01 1eerB 227 6.02e+01 1eerB b.1.2.1,b.1.2.1 22011,22012 3cnqP 80 6.07e+01 2d37A 176 6.27e+01 2hxvA 360 6.30e+01 c.71.1.2,c.97.1.2 136859,136860 1han 297 6.43e+01 1han 2fmpA 335 6.45e+01 a.60.6.1,a.60.12.1,d.218.1.2 133786,133787,133788 1oglA 283 6.48e+01 a.204.1.1 92922 1rz3A 201 6.53e+01 c.37.1.6 98132 1dqpA 230 6.56e+01 1dqnA c.61.1.1 34069 2q1fA 1022 6.56e+01 2bx2L 517 6.60e+01 1zy4A 303 6.62e+01 2aydA 76 6.64e+01 2e4tA 519 6.71e+01 1rlw 126 6.73e+01 1rlw 1rlwA 126 6.73e+01 b.7.1.1 23177 1uliA 460 6.73e+01 b.33.1.2,d.129.3.3 107921,107922 1o7dD 282 6.83e+01 2jixB 225 6.85e+01 2vl6A 268 6.94e+01 2i02A 148 7.01e+01 b.45.1.1 136936 1lkdA 297 7.01e+01 d.32.1.3,d.32.1.3 78059,78060 2htiA 185 7.06e+01 b.45.1.1 136744 3bnwA 181 7.10e+01 2aqpA 164 7.12e+01 2eb0A 307 7.17e+01 2c30A 321 7.17e+01 1tvoA 368 7.17e+01 1u58A 253 7.25e+01 1o5uA 101 7.31e+01 b.82.1.8 92518 2pajA 492 7.33e+01 1t9fA 187 7.46e+01 b.42.6.1 106710 3cqyA 370 7.52e+01 1i1iP 681 7.61e+01 1i1iP d.92.1.5 40297 1w9aA 147 7.73e+01 b.45.1.1 114408 2nwaA 88 7.76e+01 2j59M 168 7.81e+01 1e5kA 201 7.82e+01 1fr9A c.68.1.8 34578 1om4A 422 7.83e+01 d.174.1.1 87067 1ekfA 365 7.99e+01 1ekfA e.17.1.1 59445