# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ny1B 184 6.44e-02 b.1.1.1 138764 b.1.1.3 138765 3cbnA 151 9.36e-02 1dlcA 584 3.90e-01 b.18.1.3 23719 b.77.2.1 27976 f.1.3.1 43391 2hf2A 283 7.50e-01 1qfjA 232 8.51e-01 1qfjA b.43.4.2 25655 c.25.1.1 31545 1cdy 178 9.10e-01 1cdy 1rlmA 271 9.19e-01 c.108.1.10 111860 1rloA 271 1.01e+00 c.108.1.10 111864 1y8xA 160 1.95e+00 d.20.1.1 122769 2hzqA 174 2.18e+00 1iwmA 186 2.56e+00 b.125.1.2 83758 1x3cA 73 2.68e+00 g.37.1.1 121660 1d2eA 397 2.90e+00 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 2obtA 327 2.97e+00 2qklA 127 3.16e+00 1z4vA 532 3.43e+00 2re7A 134 4.31e+00 1gmuA 143 5.25e+00 b.107.1.1 65335 d.58.38.1 65336 2ix2A 249 5.34e+00 2axwA 134 5.44e+00 1xf1A 926 5.73e+00 1ex2A 189 6.46e+00 1ex2A c.51.4.2 33225 3cnqP 80 6.62e+00 2z00A 426 7.52e+00 3cswA 285 8.59e+00 1ub9A 100 9.32e+00 a.4.5.28 99159 2uxyA 341 9.72e+00 1uj6A 227 9.73e+00 c.124.1.4 107898 d.58.40.1 107899 1um5H 217 1.00e+01 b.1.1.1 113302 b.1.1.2 113303 2oizA 361 1.01e+01 2agyA 361 1.01e+01 1dt9A 437 1.03e+01 1dt9A c.55.4.2 33738 d.79.3.2 39815 d.91.1.1 40257 2dyuA 334 1.10e+01 1ru0A 105 1.12e+01 d.74.1.1 111937 1qh0A 295 1.15e+01 b.43.4.2 68891 c.25.1.1 68892 2qh0A 138 1.17e+01 2cg4A 152 1.17e+01 a.4.5.32 130417 d.58.4.2 130418 1ywhA 313 1.22e+01 1gvhA 396 1.24e+01 a.1.1.2 70601 b.43.4.2 70602 c.25.1.5 70603 3c0fB 91 1.28e+01 2rmpA 361 1.28e+01 2rmpA b.50.1.2 26825 2yyoA 171 1.38e+01 1kw3B 292 1.41e+01 d.32.1.3 77549 d.32.1.3 77550 3cjxA 165 1.48e+01 2co7B 221 1.48e+01 2ghsA 326 1.55e+01 b.68.6.1 135209 1qftA 175 1.57e+01 1qftA b.60.1.1 27151 1u7iA 136 1.58e+01 d.32.1.7 107724 3c1mA 473 1.62e+01 1z9nA 177 1.67e+01 1w34A 304 1.69e+01 b.43.4.2 120620 c.25.1.1 120621 2bsaA 303 1.69e+01 b.43.4.2 129078 c.25.1.1 129079 2cwsA 237 1.79e+01 1xtlA 175 1.81e+01 2q4nA 166 1.83e+01 b.60.1.8 139871 2bmwA 304 1.84e+01 b.43.4.2 128815 c.25.1.1 128816 1ifrA 121 1.85e+01 b.1.16.1 71203 1jj2A 239 1.91e+01 1rl2A b.34.5.3 63084 b.40.4.5 63085 1hl9A 449 1.92e+01 b.71.1.3 90650 c.1.8.11 90651 3cniA 156 1.94e+01 1tf6A 190 1.96e+01 1tf6A g.37.1.1 45060 g.37.1.1 45061 g.37.1.1 45062 g.37.1.1 45063 g.37.1.1 45064 g.37.1.1 45065 1ogiA 303 1.98e+01 b.43.4.2 92914 c.25.1.1 92915 1ikpA 613 2.01e+01 b.29.1.7 66182 d.166.1.1 66183 f.1.5.1 66184 1konA 249 2.06e+01 e.39.1.1 72823 1fx5A 242 2.08e+01 1led b.29.1.1 24135 1rl5A 60 2.10e+01 1xccA 220 2.10e+01 c.47.1.10 115113 2c78A 405 2.14e+01 b.43.3.1 130037 b.44.1.1 130038 c.37.1.8 130039 1eagA 342 2.17e+01 1eagA b.50.1.2 26826 2a13A 166 2.22e+01 b.60.1.8 125971 1pzdA 322 2.24e+01 b.1.10.3 95413 d.105.1.2 95414 1ej6D 418 2.25e+01 i.7.1.1 45970 1xtmA 175 2.26e+01 1aipA 405 2.27e+01 1efcA b.43.3.1 25697 b.44.1.1 25737 c.37.1.8 32132 1c5cH 215 2.29e+01 1igtB b.1.1.1 20475 b.1.1.2 21439 1exmA 405 2.33e+01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 2dg1A 333 2.36e+01 b.68.6.1 131493 2ntiA 249 2.37e+01 1pzsA 208 2.39e+01 b.1.8.1 104397 1fltX 95 2.42e+01 1fltX b.1.1.4 21765 1b2rA 304 2.51e+01 1fnc b.43.4.2 25648 c.25.1.1 31538 1yudA 170 2.55e+01 b.82.1.16 124046 2id4A 503 2.57e+01 b.18.1.20 137265 c.41.1.1 137266 2oojA 141 2.59e+01 1usrA 454 2.59e+01 b.68.1.1 99881 1plc 99 2.63e+01 1plc 1plcA 99 2.63e+01 b.6.1.1 22846 1b3cA 64 2.66e+01 1aho g.3.7.1 44121 1o4rA 108 2.66e+01 d.93.1.1 92469 1ypcI 64 2.68e+01 2sniI d.40.1.1 38570 1r64A 481 2.70e+01 b.18.1.20 97140 c.41.1.1 97141 1cqxA 403 2.73e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1shaA 104 2.75e+01 1fmk d.93.1.1 40424 1xaoA 121 2.76e+01 1iz6A 138 2.79e+01 b.34.5.2 76976 b.40.4.5 76977 2petA 231 2.82e+01 1go2A 304 2.83e+01 b.43.4.2 76243 c.25.1.1 76244 2iw0A 254 2.85e+01 c.6.2.3 137737 1u0qA 125 2.85e+01 1ft9A 222 2.87e+01 1ft9A a.4.5.4 16107 b.82.3.1 28131 1w6tA 444 2.91e+01 c.1.11.1 120670 d.54.1.1 120671 1o12A 376 2.93e+01 b.92.1.5 80758 c.1.9.10 80759 1dppA 507 2.94e+01 1dpe c.94.1.1 35800 2ifsA 169 2.99e+01 1coaI 64 3.00e+01 2sniI d.40.1.1 38574 2fn9A 290 3.03e+01 1ddzA 496 3.03e+01 1ddzA c.53.2.1 33372 c.53.2.1 33373 2z0tA 109 3.03e+01 2i24N 121 3.06e+01 2a8jA 420 3.08e+01 2a8mA 420 3.10e+01 1r4xA 275 3.12e+01 b.1.10.3 97054 d.105.1.2 97055 2d7nA 93 3.15e+01 b.1.18.10 131322 1ctn 540 3.16e+01 1ctn 3bxoA 239 3.19e+01 1ylhA 560 3.19e+01 1oi0A 124 3.22e+01 c.97.3.1 93045 1ot5A 477 3.25e+01 b.18.1.20 87409 c.41.1.1 87410 1edqA 540 3.26e+01 1ctn b.1.18.2 21873 c.1.8.5 29002 d.26.3.1 38436 1k9tA 540 3.33e+01 b.1.18.2 77298 c.1.8.5 77299 d.26.3.1 77300 1whi 122 3.41e+01 1whi 1whiA 122 3.41e+01 b.39.1.1 24810 1shdA 107 3.41e+01 1fmk d.93.1.1 40440 2z4tA 514 3.43e+01 2apsA 162 3.46e+01 1yaiA b.1.8.1 22298 1qz8A 113 3.46e+01 b.140.1.1 96619 2hft 218 3.47e+01 1boy 2hftA 218 3.47e+01 b.1.2.1 21951 b.1.2.1 21952 1vih 71 3.47e+01 1vih 3cncA 220 3.52e+01 2r0hA 164 3.55e+01 2v3mA 131 3.57e+01 1ikoP 178 3.61e+01 b.6.1.5 71243 2uubL 135 3.66e+01 b.40.4.5 139943 2eklA 313 3.68e+01 1h6rA 236 3.72e+01 d.22.1.1 65683 2pa6A 427 3.74e+01 1vqoA 240 3.74e+01 b.34.5.3 120361 b.40.4.5 120362 2b9uA 176 3.79e+01 3czbA 351 3.79e+01 2e27L 119 3.83e+01 1kcxA 518 3.85e+01 b.92.1.3 90953 c.1.9.6 90954 1fmk 452 3.85e+01 1fmk 2viuB 175 3.93e+01 1hgeB h.3.1.1 45676 2eixA 243 3.97e+01 1hgeB 175 3.99e+01 1hgeB h.3.1.1 45680 1yh2A 175 3.99e+01 d.20.1.1 123158 1qtyT 101 4.00e+01 1fltX b.1.1.4 21769