# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2o5fA 156 2.812e-13 2fkbA 162 1.229e-11 d.113.1.2 133650 1x84A 177 4.769e-10 d.113.1.2 121795 1hztA 154 2.072e-09 1i9aA d.113.1.2 61459 1i9aA 179 5.158e-08 1i9aA d.113.1.2 62082 2dhoA 216 4.673e-05 2icjA 220 2.413e-04 1vk6A 258 2.088e-03 d.113.1.4 111609 d.113.1.4 100852 g.41.14.1 111610 2b0vA 149 2.936e-03 d.113.1.1 127650 1vcdA 127 7.747e-03 d.113.1.1 119970 1k2eA 153 8.813e-03 d.113.1.1 72010 1nqzA 172 1.293e-02 d.113.1.1 86077 1sjyA 155 1.455e-02 d.113.1.1 98900 1mqeA 188 1.634e-02 d.113.1.1 91394 2b06A 151 1.777e-02 d.113.1.1 127624 1ktgA 138 2.463e-02 d.113.1.1 72972 2pbtA 134 2.888e-02 2yyhA 139 3.370e-02 1g0sA 202 3.702e-02 1g0sA d.113.1.1 60187 2pqvA 151 4.744e-02 1ryaA 161 5.947e-02 d.113.1.5 105122 2p71A 133 7.376e-02 a.39.2.1 139516 1v8yA 151 7.665e-02 d.113.1.1 113581 2fmlA 260 1.223e-01 a.4.5.68 133778 d.113.1.6 133779 1f3yA 166 1.492e-01 d.113.1.1 59635 2o1cA 148 2.053e-01 2yvpA 183 2.094e-01 3bm4A 198 2.959e-01 1b9yC 168 5.027e-01 1b9yC c.47.1.6 33052 3cngA 178 6.164e-01 2odmA 80 6.305e-01 2trcP 218 7.610e-01 1b9yC c.47.1.6 33051 2gboA 83 9.463e-01 a.23.6.1 134923 1vhzA 187 1.082e+00 d.113.1.1 100718 2p12A 167 1.163e+00 1a6sA 88 1.174e+00 a.61.1.4 18134 1q33A 293 1.320e+00 d.113.1.1 95657 2qkmB 267 1.323e+00 2g0bA 189 1.430e+00 1viuA 181 1.800e+00 d.113.1.1 100771 2i8tA 150 1.833e+00 2qjtA 341 2.008e+00 1xfrA 129 2.073e+00 1kcqA 104 2.816e+00 d.109.1.1 68449 2dscA 196 2.926e+00 1dqeA 138 2.941e+00 1dqeA a.39.2.1 17388 2hjhA 326 3.145e+00 1d4xG 125 3.154e+00 1d0nA d.109.1.1 59109 1svy 103 3.207e+00 1svy 1qwvA 143 3.209e+00 a.39.2.1 96506 1q6hA 211 3.280e+00 d.26.1.1 95975 2p1lB 25 3.348e+00 1z67A 128 3.368e+00 a.259.1.1 124507 2hfkA 281 3.572e+00 1tujA 124 3.795e+00 2h7dB 35 3.920e+00 2a6tA 231 4.094e+00 a.242.1.1 126309 d.113.1.7 126310 2b5gA 165 4.708e+00 d.108.1.1 127892 1m2kA 250 5.022e+00 c.31.1.5 84754 2vil 127 5.101e+00 2vil 1iciA 257 5.785e+00 1iciA c.31.1.5 62266 2fvvA 136 5.934e+00 d.113.1.1 134226 1f6aB 218 5.980e+00 1f6aB b.1.1.2 21532 b.1.1.2 21533 1xjo 272 7.043e+00 1xjo 1nm1G 124 7.164e+00 d.109.1.1 80653 1n0xH 223 7.183e+00 b.1.1.1 91528 b.1.1.2 91529 2fb1A 224 7.526e+00 a.4.5.68 133225 d.113.1.6 133226 1xbbA 269 8.833e+00 d.144.1.7 115077 1a3rH 213 9.358e+00 1igtB b.1.1.1 19781 b.1.1.2 20891 1s5pA 226 9.615e+00 c.31.1.5 98569 1t44G 145 9.683e+00 d.109.1.1 106395 1q1aA 286 9.760e+00 c.31.1.5 95561 1qpcA 271 1.010e+01 1fgkA d.144.1.7 41685 1yc5A 235 1.019e+01 c.31.1.5 122910 2azwA 147 1.048e+01 d.113.1.1 127615 1ad0B 221 1.064e+01 1igtB b.1.1.1 20125 b.1.1.2 21155 3b5mA 195 1.072e+01 2fshA 692 1.074e+01 1afvA 152 1.086e+01 1ak4C a.73.1.1 18324 1ow4A 121 1.140e+01 a.39.2.1 93628 1svyA 103 1.168e+01 d.109.1.1 40831 1vkcA 150 1.199e+01 d.108.1.1 113663 1csnA 294 1.240e+01 d.144.1.7 41664 1fgkA 279 1.305e+01 1fgkA d.144.1.7 41693 2i3sB 37 1.322e+01 1ak4C 146 1.375e+01 1ak4C a.73.1.1 18321 1q0xH 216 1.386e+01 b.1.1.1 95517 b.1.1.2 95518 1oohA 127 1.403e+01 a.39.2.1 93383 2g9wA 120 1.491e+01 1kupB 26 1.495e+01 j.60.1.1 73016 1jpaA 274 1.536e+01 d.144.1.7 67011 1axtH 219 1.575e+01 1igtB b.1.1.1 20305 b.1.1.2 21297 1rjcA 124 1.587e+01 1j8fA 313 1.618e+01 1j8fA c.31.1.5 62738 1ma3A 243 1.734e+01 c.31.1.5 78883 1r0dA 195 1.780e+01 a.216.1.1 104715 1csn 294 1.824e+01 1csn 1z4rA 164 1.839e+01 d.108.1.1 124444 3dbaA 172 1.887e+01 2fe7A 155 1.912e+01 d.108.1.1 133325 1mp8A 253 1.914e+01 d.144.1.7 91384 2dprA 22 1.945e+01 1a0rP 189 1.957e+01 1b9yC c.47.1.6 33054 1j2jB 42 2.042e+01 a.7.8.1 84017 1erw 106 2.095e+01 1erv 2f1vA 183 2.099e+01 1tgoA 774 2.157e+01 1tgoA c.55.3.5 33721 e.8.1.1 43010 1p4oA 309 2.190e+01 d.144.1.7 87775 2pwoA 145 2.192e+01 2b4yA 261 2.211e+01 c.31.1.5 127868 1rhcA 331 2.331e+01 c.1.16.3 97468 1lktA 105 2.419e+01 1lktA b.90.1.1 28398 1qhtA 711 2.423e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1ay1H 214 2.425e+01 1igtB b.1.1.1 20243 b.1.1.2 21255 1x9mA 676 2.426e+01 c.55.3.5 114999 e.8.1.1 115000 1wktA 89 2.465e+01 b.11.1.2 23630 1ckiA 293 2.473e+01 1csn d.144.1.7 41660 1l9vA 314 2.481e+01 d.13.2.1 73760 d.216.1.1 73761 1forH 220 2.485e+01 1igtB b.1.1.1 19989 b.1.1.2 21045 1u59A 283 2.573e+01 d.144.1.7 107681 1ir3A 304 2.591e+01 1fmk d.144.1.7 41702 2erbA 124 2.621e+01 1q9rB 223 2.741e+01 b.1.1.1 96307 b.1.1.2 96308 1rliA 157 2.746e+01 c.23.5.6 97647 1pz5B 221 2.776e+01 b.1.1.1 95403 b.1.1.2 95404 1ncwH 223 2.780e+01 b.1.1.1 85555 b.1.1.2 85556 1lfkA 376 2.792e+01 a.104.1.1 77926 1u20A 197 2.834e+01 d.113.1.1 119463 1tfaA 330 2.841e+01 1nnt c.94.1.2 35880 2aamA 286 2.868e+01 c.1.8.15 126489 1uu3A 278 2.885e+01 d.144.1.7 99999 2pimA 133 2.909e+01 1jguH 218 2.921e+01 b.1.1.1 66688 b.1.1.2 66689 1nnt 329 2.953e+01 1nnt 1ghfH 213 2.957e+01 1igtB b.1.1.1 20109 b.1.1.2 21139 1rurH 219 2.990e+01 b.1.1.1 97879 b.1.1.2 97880 2k3dA 88 3.026e+01 1cezA 863 3.120e+01 1cezA e.8.1.3 43110 1rmg 423 3.141e+01 1rmg 1t7pA 663 3.168e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 2i62A 258 3.218e+01 1qsmA 151 3.220e+01 1qsmA d.108.1.1 40808 1u6mA 190 3.236e+01 d.108.1.1 113069 1zthA 246 3.263e+01 1r5rA 118 3.289e+01 a.39.2.1 97104 1a4jB 218 3.298e+01 1igtB b.1.1.1 20233 b.1.1.2 21245 3cz8A 303 3.382e+01 1nqbA 233 3.398e+01 1mfa b.1.1.1 20043 b.1.1.1 20042 1u46A 256 3.406e+01 d.144.1.7 107656 1nlbH 219 3.494e+01 b.1.1.1 80621 b.1.1.2 80622 1qsoA 150 3.497e+01 1qsmA d.108.1.1 40812 2euiA 154 3.531e+01 d.108.1.1 132387 1d2eA 398 3.558e+01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1r26A 114 3.562e+01 c.47.1.1 96847 1a7qH 117 3.579e+01 1gc1H b.1.1.1 19955 1gw5A 585 3.618e+01 a.118.1.10 70629 1t46A 298 3.631e+01 d.144.1.7 106397 1op3H 225 3.663e+01 b.1.1.1 87208 b.1.1.2 87209 1u4bA 581 3.818e+01 c.55.3.5 107664 e.8.1.1 107665 1a7oH 117 3.867e+01 1gc1H b.1.1.1 19943 1tadA 317 3.868e+01 1cipA a.66.1.1 18194 c.37.1.8 32077 2ez9A 586 3.877e+01 c.31.1.3 132627 c.36.1.5 132628 c.36.1.9 132629 1af6A 422 3.881e+01 2mprA f.4.3.2 43772 1a6tB 218 3.889e+01 1igtB b.1.1.1 20249 b.1.1.2 21259 1t0tV 244 3.958e+01 d.58.4.10 106229 1jf9A 406 3.968e+01 1c0nA c.67.1.3 62931