PFRMAT SS
TARGET T0510
AUTHOR SAM-T02-server 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0510.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0510.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0510.t2k.str.rdb  (weight 1.53983)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0510.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0510
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0510.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 289
METHOD
METHOD ============================================
METHOD Comments from T0510.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0510
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0510.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 289
METHOD
METHOD ============================================
METHOD Comments from T0510.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0510
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0510.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 289
METHOD
METHOD ============================================
MODEL 1
M C 0.95
A C 0.87
Y C 0.78
D C 0.73
G H 0.85
L H 0.95
F H 0.95
T H 0.97
K H 0.98
K H 0.98
M H 0.98
V H 0.97
E H 0.96
S H 0.92
L H 0.86
Q H 0.71
F H 0.56
L C 0.53
T C 0.68
T C 0.77
G C 0.58
R E 0.49
V E 0.56
H E 0.61
K E 0.54
I E 0.62
N E 0.70
Q E 0.53
P C 0.73
D C 0.83
N C 0.90
D C 0.88
T E 0.76
I E 0.95
L E 0.97
M E 0.98
V E 0.98
V E 0.97
R E 0.94
Q E 0.76
N C 0.88
R C 0.91
Q C 0.77
N C 0.66
H E 0.76
Q E 0.94
L E 0.97
L E 0.97
L E 0.97
S E 0.92
I E 0.72
H C 0.60
P C 0.83
N C 0.85
F C 0.74
S C 0.64
R E 0.74
L E 0.89
Q E 0.90
L E 0.86
T E 0.57
T C 0.75
K C 0.86
K C 0.90
Y C 0.89
D C 0.88
N C 0.91
P C 0.87
F C 0.84
N C 0.88
P C 0.85
P C 0.53
M H 0.79
F H 0.93
A H 0.96
R H 0.97
V H 0.97
F H 0.97
R H 0.97
K H 0.95
H H 0.88
L H 0.70
E C 0.63
G C 0.88
G C 0.85
I E 0.56
I E 0.83
E E 0.90
S E 0.90
I E 0.88
K E 0.87
Q E 0.78
I C 0.51
G C 0.81
N C 0.80
D C 0.63
R E 0.80
R E 0.95
I E 0.98
E E 0.98
I E 0.97
D E 0.95
I E 0.84
K E 0.59
S C 0.68
K C 0.78
D C 0.71
E C 0.68
I C 0.74
G C 0.87
D C 0.82
T C 0.59
I E 0.50
Y E 0.64
R E 0.87
T E 0.96
V E 0.98
I E 0.98
L E 0.98
E E 0.96
I E 0.89
M E 0.66
G C 0.70
K C 0.75
H C 0.71
S C 0.66
N E 0.53
L E 0.94
I E 0.97
L E 0.97
V E 0.94
D C 0.64
E C 0.96
N C 0.97
R C 0.89
K C 0.49
I E 0.84
I E 0.83
E E 0.70
G E 0.54
F E 0.50
K E 0.51
H E 0.46
L C 0.64
T C 0.86
P C 0.73
N C 0.72
T C 0.62
N C 0.74
H C 0.61
Y C 0.47
R E 0.56
T E 0.65
V E 0.58
M C 0.63
P C 0.87
G C 0.92
F C 0.70
N E 0.51
Y E 0.50
E C 0.66
A C 0.84
P C 0.93
P C 0.91
T C 0.85
Q C 0.77
H C 0.81
K C 0.84
I C 0.86
N C 0.93
P C 0.70
Y C 0.67
D C 0.69
I C 0.73
T C 0.79
G H 0.90
A H 0.94
E H 0.95
V H 0.96
L H 0.95
K H 0.94
Y H 0.91
I H 0.84
D H 0.70
F H 0.54
N C 0.72
A C 0.61
G H 0.55
N H 0.69
I H 0.90
A H 0.94
K H 0.95
Q H 0.96
L H 0.95
L H 0.94
N H 0.89
Q H 0.83
F H 0.65
E C 0.56
G C 0.82
F C 0.79
S C 0.74
P H 0.93
L H 0.96
I H 0.97
T H 0.97
N H 0.97
E H 0.97
I H 0.97
V H 0.97
S H 0.95
R H 0.90
R H 0.66
Q C 0.80
F C 0.86
M C 0.87
T C 0.87
S C 0.87
S C 0.84
T C 0.80
L H 0.57
P H 0.62
E H 0.60
A C 0.57
F C 0.64
D H 0.88
E H 0.91
V H 0.93
M H 0.95
A H 0.95
E H 0.94
T H 0.94
K H 0.95
L H 0.94
P H 0.93
P H 0.94
T H 0.94
P H 0.94
I H 0.94
F H 0.95
H H 0.94
K H 0.93
N H 0.90
H H 0.80
E H 0.50
T C 0.84
G C 0.90
K C 0.79
E C 0.72
D C 0.55
F E 0.71
Y E 0.85
F E 0.83
I E 0.57
K C 0.78
L C 0.88
N C 0.77
Q E 0.51
F E 0.66
N E 0.62
D E 0.54
D E 0.48
T E 0.48
V C 0.46
T C 0.53
Y C 0.60
D C 0.68
S C 0.74
L H 0.78
N H 0.81
D H 0.83
L H 0.85
L H 0.84
D H 0.75
R H 0.73
F H 0.70
Y H 0.63
D H 0.54
A H 0.53
R H 0.69
G H 0.64
E H 0.57
R H 0.60
E H 0.52
R H 0.48
V C 0.52
K C 0.66
Q C 0.91
END