# List of top-scoring protein chains for t2k.w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.soe.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
3cbgA	232	4.70e-26			
2hnkA	239	2.90e-25			
2avdA	229	1.59e-23		c.66.1.1	127377
3c3yA	237	7.08e-21			
1suiA	247	1.19e-20		c.66.1.1	119049
2gpyA	233	1.45e-17			
3c3pA	210	5.55e-14			
2cl5A	221	2.30e-09		c.66.1.1	130570
1h1dA	221	2.30e-09		c.66.1.1	83452
3bwmA	214	6.83e-09			
3bwyA	214	8.11e-09			
1dl5A	317	8.17e-08	1dl5A	c.66.1.7	64720
				d.197.1.1	64721
2yxeA	215	2.93e-06			
1o54A	277	8.62e-06		c.66.1.13	92482
1jg1A	235	1.39e-05		c.66.1.7	66661
1l3iA	192	1.91e-05		c.66.1.22	77676
1yb2A	275	3.11e-05		c.66.1.13	122868
2b25A	336	8.20e-05		c.66.1.13	127699
2gh1A	301	1.35e-04		c.66.1.49	135170
2as0A	396	3.44e-04		b.122.1.9	127227
				c.66.1.51	127228
1i9gA	280	3.66e-04		c.66.1.13	62090
1vbfA	231	3.97e-04		c.66.1.7	108475
1r8xA	292	5.66e-04		c.66.1.5	104855
2aztA	295	6.41e-04			
2pwyA	258	6.85e-04			
1d2gA	292	7.87e-04	1xvaA	c.66.1.5	34187
1xvaA	292	8.16e-04	1xvaA	c.66.1.5	34183
1r74A	294	1.08e-03		c.66.1.5	104828
1wznA	252	1.66e-03		c.66.1.43	121525
1wxxA	382	1.89e-03		b.122.1.9	121418
				c.66.1.51	121419
2q41A	334	1.98e-03		c.66.1.17	139815
2o57A	297	2.36e-03			
1zx0A	236	2.50e-03		c.66.1.16	125757
3busA	273	3.10e-03			
2yvlA	248	3.17e-03			
1xclA	235	4.08e-03		c.66.1.16	115127
1p1cA	199	4.70e-03		c.66.1.16	87669
1khhA	198	4.77e-03		c.66.1.16	68615
1i1nA	226	5.70e-03		c.66.1.7	71102
1nkvA	256	6.25e-03		c.66.1.21	80577
2ex4A	241	1.01e-02		c.66.1.42	132516
1y8cA	246	1.18e-02		c.66.1.43	116563
3d2lA	243	1.22e-02			
1ixkA	315	1.65e-02		c.66.1.38	90716
1tw3A	360	2.05e-02		a.4.5.29	107373
				c.66.1.12	107374
1vl5A	260	2.49e-02		c.66.1.41	108720
1xxlA	239	2.72e-02		c.66.1.41	116203
2pjdA	343	2.81e-02			
1sg9A	282	2.97e-02		c.66.1.30	105526
1nv8A	284	2.97e-02		c.66.1.30	86224
1vq1A	294	2.97e-02		c.66.1.30	120067
1r18A	227	3.50e-02		c.66.1.7	96800
1vlmA	219	3.58e-02		c.66.1.41	108836
3cjtA	254	4.52e-02			
2avnA	260	4.54e-02		c.66.1.41	127380
2nxcA	254	4.62e-02		c.66.1.39	138739
1qzzA	374	4.82e-02		a.4.5.29	96719
				c.66.1.12	96720
3bwcA	304	5.28e-02			
2ipxA	233	5.44e-02			
1xdzA	240	5.96e-02		c.66.1.20	115196
2bm8A	236	7.74e-02		c.66.1.50	128771
2br4A	236	8.23e-02		c.66.1.50	128982
1dusA	194	8.56e-02	1dusA	c.66.1.4	34182
2b3tA	276	9.63e-02		c.66.1.30	127796
1t43A	277	9.64e-02		c.66.1.30	106392
1g6q1	328	1.01e-01	1g6q2		
1g6q2	328	1.01e-01	1g6q2		
1ve3A	227	1.02e-01		c.66.1.43	120010
2b2cA	314	1.05e-01		c.66.1.17	127706
2igtA	332	1.20e-01		c.66.1.51	137401
3cc8A	230	1.42e-01			
2r3sA	335	1.61e-01			
2o07A	304	1.63e-01		c.66.1.17	138862
2h1rA	299	1.77e-01			
2pbfA	227	1.89e-01			
1uirA	314	1.94e-01		c.66.1.17	99429
1s7dA	216	2.23e-01		b.60.1.4	105348
1txlA	215	2.23e-01		b.60.1.4	107429
1oejA	193	2.50e-01		b.60.1.4	92798
2yxlA	450	2.55e-01			
2nvbA	352	2.68e-01			
2pwpA	282	3.36e-01			
2i7cA	283	3.36e-01			
2frxA	479	3.41e-01			
2pt6A	321	3.46e-01			
1inlA	296	3.81e-01		c.66.1.17	66220
1x19A	359	3.96e-01			
1p91A	269	4.08e-01		c.66.1.33	94378
2yqzA	263	4.50e-01			
2gs9A	211	5.01e-01			
2h00A	254	5.10e-01		c.66.1.54	135925
1pryA	227	5.16e-01		c.66.1.3	95063
3bkwA	243	5.34e-01			
2nnwB	234	5.41e-01			
1zq9A	285	5.61e-01		c.66.1.24	125505
1ykfA	352	6.90e-01	1pedA	b.35.1.2	24757
				c.2.1.1	29773
2qzjA	136	8.80e-01			
1e3jA	352	8.88e-01	1e3jA	b.35.1.2	24765
				c.2.1.1	29781
2admA	421	1.18e+00	2admA	c.66.1.27	111611
				d.287.1.1	111612
1aqjA	421	1.18e+00	2admA	c.66.1.27	111563
				d.287.1.1	111564
2iftA	201	1.29e+00		c.66.1.46	137347
1g8aA	227	1.39e+00		c.66.1.3	90506
3bzbA	281	1.43e+00			
1ne2A	200	1.46e+00		c.66.1.32	85586
1qoxA	449	1.54e+00		c.1.8.4	28965
1nt2A	210	1.59e+00		c.66.1.3	86149
1sqgA	429	1.60e+00		a.79.1.3	105912
				c.66.1.38	105913
1qamA	244	1.62e+00	2ercA	c.66.1.24	34220
2ercA	244	1.62e+00	2ercA	c.66.1.24	34224
3bkxA	275	1.85e+00			
3bxoA	239	1.86e+00			
2ih2A	421	2.01e+00			
2ibtA	421	2.01e+00		c.66.1.27	137205
				d.287.1.1	137206
2p7iA	250	2.05e+00			
2p35A	259	2.19e+00			
1d2vC	466	2.35e+00	1mhlC		
1mhlC	466	2.35e+00	1mhlC		
1g38A	393	2.54e+00	2admA	c.66.1.27	111567
				d.287.1.1	111568
2yxdA	183	2.72e+00			
2eerA	347	3.82e+00			
1q7fA	286	4.02e+00		b.68.9.1	96036
2ozvA	260	4.05e+00			
1g8sA	230	4.43e+00		c.66.1.3	90507
1fbnA	230	4.43e+00	1fbnA	c.66.1.3	34181
1fokA	576	5.30e+00	2fokA	a.4.5.12	16137
				a.4.5.12	16138
				a.4.5.12	16139
				c.52.1.12	33325
1jsxA	207	5.32e+00		c.66.1.20	71846
1u9dA	122	5.46e+00		d.80.1.5	107749
2fokA	579	5.76e+00	2fokA	a.4.5.12	16131
				a.4.5.12	16132
				a.4.5.12	16133
				c.52.1.12	33323
2gqtA	268	5.89e+00			
1f3lA	321	6.05e+00	1g6q2	c.66.1.6	59630
2b4qA	276	6.16e+00			
1m2hA	249	6.18e+00		c.31.1.5	84751
1m2gA	249	6.19e+00		c.31.1.5	84750
1iciA	256	6.24e+00	1iciA	c.31.1.5	62266
1m2jA	249	6.36e+00		c.31.1.5	84753
1xtpA	254	6.79e+00		c.66.1.42	116031
2fytA	340	6.86e+00		c.66.1.6	134391
1jvbA	347	7.37e+00		b.35.1.2	77181
				c.2.1.1	77182
3cggA	195	7.58e+00			
1yqzA	438	7.88e+00			
1ntoA	347	7.93e+00		b.35.1.2	92137
				c.2.1.1	92138
1gu7A	364	8.50e+00		b.35.1.2	83321
				c.2.1.1	83322
1n9gB	386	8.59e+00		b.35.1.2	91722
				c.2.1.1	91723
1gyrA	364	8.70e+00		b.35.1.2	83386
				c.2.1.1	83387
1h0kA	364	8.76e+00		b.35.1.2	83435
				c.2.1.1	83436
2b83A	351	8.83e+00		b.35.1.2	128059
				c.2.1.1	128060
1or8A	340	8.85e+00		c.66.1.6	93451
1n9gA	386	8.85e+00		b.35.1.2	91720
				c.2.1.1	91721
1oriA	343	8.87e+00		c.66.1.6	87339
1q77A	138	8.97e+00		c.26.2.4	96023
1i3kA	348	8.98e+00	1xel	c.2.1.2	61595
1hzjA	348	8.98e+00	1xel	c.2.1.2	61450
1ek6A	348	8.98e+00	1xel	c.2.1.2	29800
2ei4A	253	9.11e+00			
1vgoA	253	9.11e+00			
1kevA	351	9.23e+00	1pedA	b.35.1.2	24749
				c.2.1.1	29765
1pedA	351	9.23e+00	1pedA	b.35.1.2	24753
				c.2.1.1	29769
1nxjA	183	9.79e+00		c.8.7.1	86382
1l1fA	505	9.87e+00		c.2.1.7	73456
				c.58.1.1	73457
2p8jA	209	1.04e+01			
1jqbA	351	1.07e+01		b.35.1.2	77151
				c.2.1.1	77152
2q3rA	372	1.07e+01		c.1.4.1	139801
2qg6A	199	1.07e+01			
2bekA	257	1.08e+01			
1ej0A	180	1.09e+01	1ej0A	c.66.1.2	34179
1m6yA	301	1.09e+01		a.60.13.1	78716
				c.66.1.23	78717
2qt1A	207	1.14e+01			
2i6gA	199	1.16e+01		c.66.1.44	137096
1fthA	122	1.17e+01		d.150.1.2	60028
1wcv1	257	1.17e+01			
1iruL	204	1.20e+01		d.153.1.4	71363
2vw2A	697	1.22e+01			
1yubA	245	1.23e+01		c.66.1.24	34219
2b64Y	354	1.30e+01			
1iz3A	349	1.31e+01		b.82.2.6	83831
1vhoA	346	1.32e+01		b.49.3.1	100694
				c.56.5.4	100695
1m2kA	249	1.33e+01		c.31.1.5	84754
1h2kA	349	1.34e+01		b.82.2.6	76572
1mzeA	351	1.34e+01		b.82.2.6	79694
1uazA	254	1.37e+01		f.13.1.1	88392
1ysjA	404	1.39e+01		c.56.5.4	123975
				d.58.19.1	123976
1im8A	244	1.48e+01		c.66.1.14	66212
2akzA	439	1.52e+01		c.1.11.1	126944
				d.54.1.1	126945
2bvbA	137	1.53e+01			
1orhA	353	1.56e+01		c.66.1.6	93455
2pffA	1688	1.64e+01			
1u5tA	233	1.64e+01		a.4.5.54	107684
				a.4.5.54	107685
2ojvA	595	1.67e+01			
3ccfA	279	1.69e+01			
2e58A	308	1.69e+01			
2ilmA	349	1.76e+01			
1r2kA	169	1.79e+01		c.57.1.1	104781
1xtzA	264	1.81e+01			
1mkzA	172	1.81e+01		c.57.1.1	84998
2uv8A	1614	1.83e+01			
1bc5A	269	1.88e+01	1af7	a.58.1.1	17929
				c.66.1.8	34204
1af7A	274	1.90e+01		a.58.1.1	17928
				c.66.1.8	34203
2vhvA	377	1.92e+01			
2gj1A	583	1.92e+01			
2o86A	595	1.95e+01			
1m1zA	513	1.98e+01		c.26.2.1	78457
				d.153.1.1	78458
2gjmA	583	1.98e+01			
2vojA	371	1.99e+01			
1a0eA	443	1.99e+01	1a0cA	c.1.15.3	29537
2vhxA	377	1.99e+01			
3bxiA	595	2.00e+01			
1m2nA	249	2.01e+01		c.31.1.5	84756
1pl8A	356	2.01e+01		b.35.1.2	94878
				c.2.1.1	94879
1a0tP	413	2.02e+01	1a0tP	f.4.3.2	43794
3b98A	475	2.05e+01			
2yuiA	182	2.06e+01			
2e7kA	91	2.09e+01			
2dmbA	124	2.11e+01		b.1.18.10	131571
1qhxA	178	2.15e+01	1qhsA	c.37.1.3	31936
1qhsA	178	2.15e+01	1qhsA	c.37.1.3	31938
2ikcA	595	2.18e+01			
1kk9A	221	2.21e+01		d.115.1.1	77432
1hwxA	501	2.25e+01	1hwyA	c.2.1.7	30250
				c.58.1.1	33898
1hwyA	501	2.25e+01	1hwyA	c.2.1.7	30262
				c.58.1.1	33910
1lbvA	252	2.33e+01		e.7.1.1	73813
2yx1A	336	2.36e+01			
1uwaR	475	2.38e+01		c.1.14.1	119752
				d.58.9.1	119753
1udeA	195	2.50e+01		b.40.5.1	99208
2mprA	427	2.51e+01	2mprA	f.4.3.2	43788
1v6tA	255	2.51e+01		c.6.2.5	113550
1k7jA	206	2.53e+01		d.115.1.1	72103
2f8lA	344	2.54e+01		c.66.1.45	133132
1wy7A	207	2.56e+01		c.66.1.32	121433
2esrA	177	2.70e+01		c.66.1.46	132344
1jcuA	208	2.73e+01		d.115.1.1	71634
2q2eA	369	2.77e+01			
2baqA	365	2.82e+01			
1wy6A	172	2.87e+01		a.118.20.1	121432
1o89A	345	2.88e+01		b.35.1.2	92644
				c.2.1.1	92645
1ri5A	298	2.90e+01		c.66.1.34	97502
3bf7A	255	2.98e+01			
2b9eA	309	2.99e+01		c.66.1.38	128124
2psnA	434	3.00e+01			
1p38A	379	3.07e+01		d.144.1.7	41650
1kpiA	302	3.09e+01		c.66.1.18	68743
2ewaA	379	3.10e+01		d.144.1.7	132451
1nstA	325	3.18e+01	1nstA	c.37.1.5	31951
2z62A	276	3.20e+01			
1u3tA	374	3.22e+01		b.35.1.2	113001
				c.2.1.1	113002
2eezA	369	3.33e+01			
2q18X	293	3.34e+01			
2fstX	367	3.38e+01			
3tmkA	216	3.43e+01	3tmkA	c.37.1.1	31920
2p5aA	362	3.44e+01			
3hckA	107	3.47e+01		d.93.1.1	40495
1mzuA	129	3.48e+01		d.110.3.1	79714
1xbyA	216	3.52e+01		c.1.2.3	121846
1e5tA	710	3.53e+01	1qfmA	b.69.7.1	27676
				c.69.1.4	34644
1uw9A	475	3.54e+01		c.1.14.1	119710
				d.58.9.1	119711
1gk8A	475	3.55e+01		c.1.14.1	65234
				d.58.9.1	65235
2v69A	475	3.55e+01			
1uwaA	475	3.57e+01		c.1.14.1	119734
				d.58.9.1	119735
3cioA	299	3.57e+01			
2fsoX	367	3.60e+01			
2fslX	367	3.61e+01			
2v63A	475	3.61e+01			
2fb7A	95	3.62e+01		b.38.1.5	133238
1a0cA	438	3.65e+01	1a0cA	c.1.15.3	29529
2ovaA	182	3.67e+01			
2r8bA	251	3.68e+01			
2zjq5	122	3.75e+01			
2qosC	173	3.75e+01			
2otgB	157	3.75e+01			
1pjcA	361	3.83e+01	1sayA	c.2.1.4	30101
				c.23.12.2	31361
1sayA	361	3.83e+01	1sayA	c.2.1.4	30102
				c.23.12.2	31362
1w8iA	156	3.85e+01		c.120.1.1	114368
2ovdA	182	3.86e+01			
2npqA	367	3.87e+01			
2ozaB	366	3.90e+01		d.144.1.7	139444
1oz1A	372	3.91e+01		d.144.1.7	93780
2gfsA	372	3.91e+01		d.144.1.7	135109
1lf7A	182	3.94e+01		b.60.1.1	73878
2qd9A	366	3.94e+01			
2balA	365	3.95e+01		d.144.1.7	128240
2v68A	475	3.96e+01			
2fvoA	333	3.96e+01		e.38.1.1	134220
1hdyA	374	3.96e+01	2ohxA	b.35.1.2	24723
				c.2.1.1	29739
1rq0A	342	3.97e+01		e.38.1.1	105044
3c70A	257	3.98e+01			
1qj4A	257	3.98e+01	1qj4A	c.69.1.20	34796
1yasA	257	3.98e+01	1qj4A	c.69.1.20	34801
1hdzA	374	3.99e+01	2ohxA	b.35.1.2	24725
				c.2.1.1	29741
1yb6A	256	4.00e+01		c.69.1.20	122870