PFRMAT SS
TARGET T0509
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0509.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 69
METHOD
MODEL 1
M C 0.850
S C 0.742
N C 0.557
A H 0.786
F H 0.868
E H 0.903
Y H 0.967
L H 0.980
R H 0.987
T H 0.986
Y H 0.982
V H 0.972
E H 0.939
S H 0.843
T H 0.433
T C 0.672
E C 0.572
T C 0.543
D C 0.687
A H 0.447
A H 0.662
V H 0.786
A H 0.859
R H 0.889
A H 0.941
R H 0.930
E H 0.943
D H 0.917
A H 0.895
A H 0.894
E H 0.772
F H 0.710
G C 0.391
L C 0.329
P T 0.319
A T 0.338
P T 0.296
D T 0.320
E C 0.347
M C 0.574
T C 0.827
G H 0.948
Q H 0.972
L H 0.989
L H 0.996
T H 0.998
T H 0.999
L H 1.000
A H 1.000
A H 0.999
T H 0.999
T H 0.994
N H 0.982
G H 0.954
N H 0.812
G C 0.744
S C 0.508
T C 0.503
G E 0.806
A E 0.984
I E 0.988
A E 0.989
I E 0.894
T E 0.476
P T 0.391
A T 0.442
A H 0.509
G H 0.536
L H 0.929
V H 0.949
G H 0.988
L H 0.987
Y H 0.978
I H 0.970
L H 0.946
N H 0.881
G C 0.348
L C 0.693
A T 0.872
D T 0.944
N T 0.928
T T 0.567
T E 0.854
L E 0.980
T E 0.980
C E 0.977
I E 0.866
D E 0.435
P T 0.558
E T 0.556
S H 0.480
E H 0.689
H H 0.819
Q H 0.961
R H 0.976
Q H 0.986
A H 0.989
K H 0.995
A H 0.996
L H 0.996
F H 0.990
R H 0.976
E H 0.965
A H 0.902
G C 0.885
Y C 0.743
S T 0.462
P T 0.576
S T 0.406
R E 0.598
V E 0.784
R E 0.837
F E 0.665
L C 0.373
L C 0.457
S T 0.415
R H 0.504
P H 0.600
L H 0.647
D H 0.710
V H 0.786
M H 0.686
S H 0.667
R H 0.627
L H 0.538
A H 0.384
N T 0.490
D T 0.512
S C 0.454
Y C 0.426
Q E 0.467
L E 0.945
V E 0.985
F E 0.986
G E 0.962
Q E 0.679
V T 0.560
S T 0.632
P G 0.502
M G 0.326
D H 0.414
L H 0.888
K H 0.975
A H 0.979
L H 0.985
V H 0.986
D H 0.984
A H 0.978
A H 0.969
W H 0.863
P H 0.792
L H 0.637
L C 0.399
R T 0.701
R T 0.806
G T 0.797
G E 0.901
A E 0.994
L E 0.998
V E 0.995
L E 0.941
A T 0.756
D T 0.703
A T 0.520
L H 0.398
L H 0.428
D T 0.466
G T 0.533
T C 0.404
I E 0.424
A C 0.432
D T 0.594
Q T 0.482
T T 0.563
R T 0.578
K C 0.448
D C 0.545
R H 0.806
D H 0.935
T H 0.990
Q H 0.999
A H 0.998
A H 0.998
R H 0.998
D H 0.997
A H 0.997
D H 0.994
E H 0.986
Y H 0.970
I H 0.958
R H 0.884
S H 0.714
I T 0.640
E T 0.644
G T 0.588
A E 0.584
H E 0.879
V E 0.944
A E 0.921
R E 0.892
L E 0.645
P E 0.401
L T 0.663
G T 0.628
A T 0.627
G T 0.480
L E 0.495
T E 0.723
V E 0.820
V E 0.765
T E 0.784
K E 0.579
A C 0.955
END