# List of top-scoring protein chains for T0507.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cozA	129	7.76e-12	c.26.1.2	31598
2b7lA	132	6.57e-11		
1qjcA	158	0.001103	c.26.1.3	63328
1h1tA	159	0.001112	c.26.1.3	83458
1vlhA	173	0.001344	c.26.1.3	108824
1od6A	160	0.008863	c.26.1.3	86836
1mrzA	293	0.01023	b.43.5.1,c.26.1.3	91452,91453
1tfuA	157	0.01418	c.26.1.3	106859
1o6bA	169	0.01986	c.26.1.3	92564
2qjoA	341	0.02914		
1f9aA	168	0.07075	c.26.1.3	31602
1kamA	194	0.1242	c.26.1.3	72254
1k4mA	213	0.1871	c.26.1.3	77258
1yumA	242	0.5889		
1ihoA	283	1.040	c.26.1.4	62390
2qjtA	352	1.793		
1lw7A	365	2.757	c.26.1.3,c.37.1.1	74295,74296
2a84A	300	4.974	c.26.1.4	126389
2ejcA	280	6.221		
2h29A	189	6.273		
2cybA	323	6.611		
1m8fA	181	7.709	c.26.1.3	84873
1ej2A	181	8.076	c.26.1.3	59414
1m8jA	181	8.621	c.26.1.3	84875
1m8gA	181	10.16	c.26.1.3	84874
2f6rA	281	11.52		
2ip1A	432	21.77		
1v8fA	276	26.72	c.26.1.4	100503
1nogA	177	45.30	a.25.2.2	85923
2z1aA	552	45.73		
1gzuA	290	49.17	c.26.1.3	70822
1kqnA	279	49.19	c.26.1.3	77492
1kkuA	279	49.98	c.26.1.3	72661
1vkoA	537	50.91	c.2.1.3,d.81.1.3	108684,108685
1aw9A	216	57.10	a.45.1.1,c.47.1.5	17736,33030
1ufvA	276	59.65	c.26.1.4	88487
2f0mA	149	75.58		
1nkgA	508	79.27	b.3.1.2,b.18.1.25,b.30.5.10	103859,103860,103861
2f0jA	149	82.12