# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cozA	129	2.40e-09	c.26.1.2	31598
1b6tA	159	8.84e-07	c.26.1.3	31600
1qjcA	158	1.34e-06	c.26.1.3	63328
1od6A	160	1.67e-06	c.26.1.3	86836
1f9aA	168	7.83e-06	c.26.1.3	31602
1lw7A	365	3.44e-05	c.26.1.3,c.37.1.1	74295,74296
1k4mA	213	4.95e-05	c.26.1.3	77258
1mrzA	293	6.67e-05	b.43.5.1,c.26.1.3	91452,91453
1kamA	194	0.000129	c.26.1.3	72254
1ej2A	181	0.000167	c.26.1.3	59414
1m8jA	181	0.000169	c.26.1.3	84875
1yumA	242	0.000193		
1tfuA	157	0.000212	c.26.1.3	106859
1hybA	181	0.000430	c.26.1.3	61399
2h29A	189	0.002061		
1kkuA	279	0.003297	c.26.1.3	72661
2qjtA	352	0.005186		
2qjoA	341	0.008932		
1nuuA	252	0.01443	c.26.1.3	86209
1kqnA	279	0.01551	c.26.1.3	77492
1n2eA	300	0.8131	c.26.1.4	85268
1v8fA	276	1.667	c.26.1.4	100503
2a84A	300	2.012	c.26.1.4	126389
1ihoA	283	2.284	c.26.1.4	62390
1km3A	247	4.699	c.1.2.3	72739
1jmvA	141	7.033	c.26.2.4	66897
2ip1A	432	7.267		
1qycA	308	8.322	c.2.1.2	96581
1y42X	392	13.00		
1i4nA	251	14.17	c.1.2.4	71114
1rthA	560	17.39	c.55.3.1,e.8.1.2	33576,43028
1wq3A	322	18.06		
1rkxA	357	19.14	c.2.1.2	97631
2yxnA	322	19.28		
1r6uA	437	19.53	c.26.1.1	97163
2cybA	323	19.57		
1thfD	253	21.58	c.1.2.1	28535
1jw9B	249	22.15	c.111.1.1	67377
2cyaA	364	23.50		
3c1oA	321	24.75		
1h3fA	432	25.13	c.26.1.1,d.66.1.4	76631,76632
1tidB	119	26.11	c.13.2.1	107000
1wjgA	137	26.85	c.26.2.4	114696
1dusA	194	26.95	c.66.1.4	34182
2pidA	356	29.20		
1vc4A	254	30.75	c.1.2.4	100557
4ts1A	319	31.63	c.26.1.1	31565
1igs	248	34.89		
2p7iA	250	35.79		
3cpgA	282	38.30		
1qydA	313	38.47	c.2.1.2	96583
1v47A	349	39.08	b.122.1.3,c.26.1.5	100292,100293
1tezA	474	39.95	a.99.1.1,c.28.1.1	112409,112410
1h4xA	117	41.04	c.13.2.1	60626
3brcA	156	41.19		
1us5A	314	41.29	c.94.1.1	99856
2gasA	307	41.75		
1qnf	484	42.15		
2z08A	137	42.70		
1he2A	206	43.59	c.2.1.2	60966
1khhA	198	46.34	c.66.1.16	68615
1pii	452	48.61		
1ylqA	96	54.35	d.218.1.5	123671
1hdoA	206	56.00	c.2.1.2	60965
487dH	224	56.13	i.1.1.2	45835
2blnA	305	57.26	b.46.1.1,c.65.1.1	128734,128735
1mioB	458	58.12	c.92.2.3	35602
1vrtA	560	58.85	c.55.3.1,e.8.1.2	33574,43023
2h00A	254	61.23	c.66.1.54	135925
1yvrA	538	63.66	a.118.25.1,c.62.1.5	124116,124117
2f48A	555	65.08	c.89.1.1	132915
1a53A	247	65.42	c.1.2.4	28564
1a53	247	65.89		
1j1uA	306	65.98	c.26.1.1	83980
2r6jA	318	66.16		
1vc1A	110	67.49	c.13.2.1	108493
1tml	286	68.18		
1vkrA	125	68.93	c.44.2.1	108689
2bodX	286	70.01	c.6.1.1	128909
3b5vA	248	70.39		
1rdfA	267	70.66	c.108.1.3	104884
2f7fA	494	71.73	c.1.17.1,d.41.2.1	133088,133089
2qkbA	154	73.37		
2fjbA	643	75.33		
1piiA	452	77.15	c.1.2.4,c.1.2.4	28559,28563
2c3zA	222	77.25		
2bogX	286	79.77		
2czdA	208	81.80	c.1.2.3	131045
1nnlA	225	83.45	c.108.1.4	85906
2q1sA	377	87.77		
1rhcA	330	87.93	c.1.16.3	97468
1fezA	256	88.79	c.108.1.3	43343