# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1cozA 129 5.49e-10 c.26.1.2 31598 1b6tA 159 7.33e-07 c.26.1.3 31600 1qjcA 158 1.67e-06 c.26.1.3 63328 1od6A 160 1.84e-06 c.26.1.3 86836 1f9aA 168 9.88e-06 c.26.1.3 31602 1k4mA 213 2.53e-05 c.26.1.3 77258 1lw7A 365 6.62e-05 c.26.1.3,c.37.1.1 74295,74296 1yumA 242 0.000142 1kamA 194 0.000148 c.26.1.3 72254 1m8jA 181 0.000244 c.26.1.3 84875 1ej2A 181 0.000248 c.26.1.3 59414 1tfuA 157 0.000498 c.26.1.3 106859 1hybA 181 0.000572 c.26.1.3 61399 1mrzA 293 0.001030 b.43.5.1,c.26.1.3 91452,91453 2h29A 189 0.001078 1kkuA 279 0.005954 c.26.1.3 72661 2qjtA 352 0.008548 1nuuA 252 0.01048 c.26.1.3 86209 2qjoA 341 0.01965 1kqnA 279 0.06043 c.26.1.3 77492 1n2eA 300 0.5156 c.26.1.4 85268 1v8fA 276 1.075 c.26.1.4 100503 2a84A 300 1.154 c.26.1.4 126389 1ihoA 283 1.397 c.26.1.4 62390 2cybA 323 2.684 1qycA 308 4.109 c.2.1.2 96581 2ip1A 432 5.422 1r6uA 437 6.478 c.26.1.1 97163 1h3fA 432 7.356 c.26.1.1,d.66.1.4 76631,76632 1y42X 392 7.481 2cyaA 364 7.890 2yxnA 322 8.298 1v47A 349 9.088 b.122.1.3,c.26.1.5 100292,100293 1tidB 119 10.05 c.13.2.1 107000 2pidA 356 10.22 1wq3A 322 11.93 4ts1A 319 12.07 c.26.1.1 31565 1rkxA 357 13.54 c.2.1.2 97631 1km3A 247 14.88 c.1.2.3 72739 1h4xA 117 15.58 c.13.2.1 60626 3c1oA 321 16.21 2gasA 307 17.50 1jw9B 249 17.77 c.111.1.1 67377 1vc1A 110 18.02 c.13.2.1 108493 1nnlA 225 18.12 c.108.1.4 85906 1n3lA 372 21.56 c.26.1.1 79966 1rthA 560 22.52 c.55.3.1,e.8.1.2 33576,43028 1tml 286 23.32 1pii 452 23.51 1zud1 251 23.66 1fezA 256 24.54 c.108.1.3 43343 2f48A 555 25.40 c.89.1.1 132915 1i4nA 251 26.77 c.1.2.4 71114 1qydA 313 27.38 c.2.1.2 96583 2r6jA 318 27.71 2pk3A 321 28.96 1db3A 372 29.13 c.2.1.2 29813 1thfD 253 29.43 c.1.2.1 28535 1rdfA 267 29.57 c.108.1.3 104884 1bwsA 321 30.21 c.2.1.2 29812 1igs 248 30.31 3brcA 156 30.47 2c29D 337 30.72 2hy5B 136 31.82 c.114.1.1 136866 2h00A 254 33.36 c.66.1.54 135925 1rpnA 335 33.53 c.2.1.2 97708 2bogX 286 33.75 2bodX 286 37.53 c.6.1.1 128909 1a9xB 379 37.70 c.8.3.1,c.23.16.1 30732,31409 1he2A 206 38.15 c.2.1.2 60966 3b5vA 248 38.50 2r7dA 469 39.42 2iskA 230 40.05 1j1uA 306 41.35 c.26.1.1 83980 1a53A 247 41.84 c.1.2.4 28564 1hdoA 206 43.53 c.2.1.2 60965 1rqlA 267 44.94 c.108.1.3 97750 2pfiA 164 48.12 2fjbA 643 50.35 2frnA 278 52.15 c.66.1.47 133993 487dH 224 53.05 i.1.1.2 45835 1e7rA 321 54.60 c.2.1.2 29808 2g4rA 160 55.87 1oheA 348 56.01 c.45.1.1,c.45.1.1 87013,87014 3c85A 183 56.10 1vr3A 191 57.81 b.82.1.6 120431 2higA 487 58.87 1a53 247 59.62 2z08A 137 59.92 1ni5A 433 63.17 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1s1mA 545 63.28 c.23.16.1,c.37.1.10 105201,105202 2czdA 208 63.43 c.1.2.3 131045 1swvA 267 64.60 c.108.1.3 112134 2cw6A 298 64.69 1vc4A 254 65.20 c.1.2.4 100557 2fhzA 109 65.67 d.311.1.1 133505 2bllA 345 65.74 c.2.1.2 128733 2p7iA 250 65.98 1o1yA 239 66.46 c.23.16.1 86554 1tfr 305 67.24 1jmvA 141 68.09 c.26.2.4 66897 1sb8A 352 69.37 c.2.1.2 105410 1wl8A 189 69.61 c.23.16.1 120997 2qkbA 154 72.47 1ho1A 242 73.72 c.1.24.1 61097 1piiA 452 75.88 c.1.2.4,c.1.2.4 28559,28563 1ylqA 96 76.14 d.218.1.5 123671 1g8fA 511 76.27 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1zo4A 473 76.56 3cqyA 370 76.64 2dsmA 72 77.02 1gsjA 258 77.47 c.73.1.2 70397 1v95A 130 78.19 c.51.1.1 108435 1y8qA 346 78.50 1e6uA 321 78.58 c.2.1.2 29805 2is8A 164 79.62 1z7bA 358 80.00 c.2.1.2 124599 3ciwA 348 82.11 3bblA 287 83.06 1vcoA 550 84.63 c.23.16.1,c.37.1.10 108508,108509 1wvgA 359 85.95 c.2.1.2 121339 2pk8A 103 87.31 d.274.1.1 139707 1q1gA 276 88.70 c.56.2.1 95574