# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cozA	129	1.33e-09	c.26.1.2	31598
1b6tA	159	8.51e-07	c.26.1.3	31600
1qjcA	158	1.45e-06	c.26.1.3	63328
1od6A	160	5.41e-06	c.26.1.3	86836
1f9aA	168	1.59e-05	c.26.1.3	31602
1lw7A	365	1.75e-05	c.26.1.3,c.37.1.1	74295,74296
1mrzA	293	0.000201	b.43.5.1,c.26.1.3	91452,91453
1k4mA	213	0.000212	c.26.1.3	77258
1tfuA	157	0.000238	c.26.1.3	106859
1m8jA	181	0.000497	c.26.1.3	84875
1kamA	194	0.000685	c.26.1.3	72254
1ej2A	181	0.000740	c.26.1.3	59414
1yumA	242	0.000986		
1hybA	181	0.002377	c.26.1.3	61399
2h29A	189	0.002794		
1kkuA	279	0.005360	c.26.1.3	72661
2qjoA	341	0.009902		
1nuuA	252	0.01391	c.26.1.3	86209
2qjtA	352	0.02306		
1kqnA	279	0.02319	c.26.1.3	77492
1v47A	349	6.982	b.122.1.3,c.26.1.5	100292,100293
1n2eA	300	10.05	c.26.1.4	85268
1x0rA	249	14.34	c.47.1.10	121562
1ihoA	283	15.30	c.26.1.4	62390
1qycA	308	18.68	c.2.1.2	96581
1km3A	247	23.04	c.1.2.3	72739
1rkxA	357	24.03	c.2.1.2	97631
1wjgA	137	30.32	c.26.2.4	114696
1a9xB	379	32.44	c.8.3.1,c.23.16.1	30732,31409
1v8fA	276	33.32	c.26.1.4	100503
2czdA	208	35.58	c.1.2.3	131045
1nnlA	225	40.78	c.108.1.4	85906
1tb3A	352	45.32	c.1.4.1	119205
2zctA	249	45.43		
1fmtA	314	45.76	b.46.1.1,c.65.1.1	25758,34174
1gesA	450	49.35	c.3.1.5,c.3.1.5,d.87.1.1	30473,30474,40168
1wl8A	189	50.52	c.23.16.1	120997
2ebuA	112	55.88		
3cpgA	282	56.66		
1qgoA	264	57.74	c.92.1.2	35596
2r6jA	318	58.97		
1tidB	119	61.79	c.13.2.1	107000
3brcA	156	63.18		
487dH	224	64.06	i.1.1.2	45835
1h5yA	253	65.29	c.1.2.1	65638
1y42X	392	69.12		
2z08A	137	70.59		
2nmlA	104	74.62	d.330.1.1	138371
2pfsA	150	77.48		
2dumA	170	78.55		
1qydA	313	83.71	c.2.1.2	96583
1a53A	247	84.38	c.1.2.4	28564
1r5jA	337	85.64	c.77.1.5	97097
3bs3A	76	85.83		
1o1yA	239	88.99	c.23.16.1	86554
1ytlA	174	89.06	c.31.1.6	124008