# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cozA	129	4.91e-08	c.26.1.2	31598
1b6tA	159	6.52e-06	c.26.1.3	31600
1qjcA	158	1.09e-05	c.26.1.3	63328
1od6A	160	2.17e-05	c.26.1.3	86836
1f9aA	168	5.34e-05	c.26.1.3	31602
1lw7A	365	0.000296	c.26.1.3,c.37.1.1	74295,74296
1m8jA	181	0.000761	c.26.1.3	84875
1mrzA	293	0.000816	b.43.5.1,c.26.1.3	91452,91453
1kamA	194	0.000823	c.26.1.3	72254
1ej2A	181	0.000838	c.26.1.3	59414
1k4mA	213	0.000860	c.26.1.3	77258
1yumA	242	0.001462		
1tfuA	157	0.001813	c.26.1.3	106859
1hybA	181	0.002234	c.26.1.3	61399
2h29A	189	0.008876		
2qjtA	352	0.01358		
2qjoA	341	0.02342		
1nuuA	252	0.02355	c.26.1.3	86209
1kkuA	279	0.02439	c.26.1.3	72661
1kqnA	279	0.09525	c.26.1.3	77492
1n2eA	300	4.933	c.26.1.4	85268
1km3A	247	6.069	c.1.2.3	72739
1v8fA	276	7.733	c.26.1.4	100503
1v47A	349	8.481	b.122.1.3,c.26.1.5	100292,100293
1ihoA	283	8.956	c.26.1.4	62390
1qycA	308	9.016	c.2.1.2	96581
1us5A	314	11.38	c.94.1.1	99856
2a84A	300	12.69	c.26.1.4	126389
1tidB	119	24.06	c.13.2.1	107000
3c1oA	321	26.42		
1nnlA	225	27.44	c.108.1.4	85906
3cpgA	282	30.27		
2yxnA	322	31.52		
1wq3A	322	31.90		
2freA	200	36.27	d.90.1.1	133985
2pidA	356	36.30		
1vc1A	110	37.83	c.13.2.1	108493
1jw9B	249	40.77	c.111.1.1	67377
1rthA	560	42.20	c.55.3.1,e.8.1.2	33576,43028
1h4xA	117	43.75	c.13.2.1	60626
4ts1A	319	44.40	c.26.1.1	31565
1rqlA	267	44.74	c.108.1.3	97750
2iskA	230	45.22		
1y42X	392	46.37		
1igs	248	46.93		
1i4nA	251	47.47	c.1.2.4	71114
1jmvA	141	50.73	c.26.2.4	66897
3brcA	156	51.16		
1fezA	256	53.23	c.108.1.3	43343
2vdwA	302	53.50		
2r6jA	318	53.67		
2ip1A	432	54.27		
1qydA	313	57.21	c.2.1.2	96583
1pii	452	57.46		
1rdfA	267	59.23	c.108.1.3	104884
1a53A	247	59.32	c.1.2.4	28564
1a53	247	61.25		
1ltqA	301	62.64	c.108.1.9,c.37.1.1	78208,78209
2g6tA	306	66.26	c.147.1.1	134717
1swvA	267	67.29	c.108.1.3	112134
2blnA	305	69.57	b.46.1.1,c.65.1.1	128734,128735
1vc4A	254	71.15	c.1.2.4	100557
2gasA	307	72.62		
1khhA	198	74.45	c.66.1.16	68615
1bs4A	168	74.69	d.167.1.1	42287
3b5vA	248	76.69		
1w8gA	234	79.72		
1fmtA	314	80.09	b.46.1.1,c.65.1.1	25758,34174
1piiA	452	82.88	c.1.2.4,c.1.2.4	28559,28563
1wjgA	137	83.01	c.26.2.4	114696
1zud1	251	83.88		
1ylqA	96	84.88	d.218.1.5	123671
1he2A	206	87.52	c.2.1.2	60966
2czdA	208	88.43	c.1.2.3	131045