# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cozA	129	6.76e-10	c.26.1.2	31598
1b6tA	159	5.38e-07	c.26.1.3	31600
1qjcA	158	7.67e-07	c.26.1.3	63328
1od6A	160	1.15e-06	c.26.1.3	86836
1f9aA	168	4.13e-06	c.26.1.3	31602
1lw7A	365	3.66e-05	c.26.1.3,c.37.1.1	74295,74296
1k4mA	213	4.91e-05	c.26.1.3	77258
1mrzA	293	0.000114	b.43.5.1,c.26.1.3	91452,91453
1ej2A	181	0.000138	c.26.1.3	59414
1m8jA	181	0.000160	c.26.1.3	84875
1kamA	194	0.000160	c.26.1.3	72254
1yumA	242	0.000211		
1tfuA	157	0.000300	c.26.1.3	106859
1hybA	181	0.000400	c.26.1.3	61399
2h29A	189	0.002111		
1kkuA	279	0.003947	c.26.1.3	72661
2qjtA	352	0.004606		
1nuuA	252	0.009016	c.26.1.3	86209
2qjoA	341	0.01173		
1kqnA	279	0.03564	c.26.1.3	77492
1qycA	308	2.494	c.2.1.2	96581
1n2eA	300	3.354	c.26.1.4	85268
1v8fA	276	5.912	c.26.1.4	100503
1km3A	247	6.150	c.1.2.3	72739
1ihoA	283	6.589	c.26.1.4	62390
2a84A	300	7.163	c.26.1.4	126389
1v47A	349	11.05	b.122.1.3,c.26.1.5	100292,100293
1wq3A	322	13.10		
1y42X	392	13.45		
4ts1A	319	15.57	c.26.1.1	31565
1qydA	313	19.19	c.2.1.2	96583
2yxnA	322	19.97		
2r6jA	318	21.37		
1fezA	256	23.68	c.108.1.3	43343
1rdfA	267	25.14	c.108.1.3	104884
2pidA	356	25.97		
1h4xA	117	32.90	c.13.2.1	60626
1tidB	119	32.98	c.13.2.1	107000
3c1oA	321	33.14		
1jw9B	249	34.85	c.111.1.1	67377
1thfD	253	34.94	c.1.2.1	28535
2ip1A	432	37.37		
1r6uA	437	37.47	c.26.1.1	97163
1i4nA	251	37.69	c.1.2.4	71114
1vc1A	110	38.53	c.13.2.1	108493
2cybA	323	39.71		
2iskA	230	40.15		
2freA	200	40.46	d.90.1.1	133985
2cyaA	364	43.00		
1jmvA	141	52.62	c.26.2.4	66897
1he2A	206	55.06	c.2.1.2	60966
1zud1	251	55.83		
1igs	248	56.65		
3brcA	156	56.96		
1rthA	560	57.35	c.55.3.1,e.8.1.2	33576,43028
1swvA	267	58.99	c.108.1.3	112134
1a9xB	379	61.05	c.8.3.1,c.23.16.1	30732,31409
1wjgA	137	61.35	c.26.2.4	114696
1hdoA	206	63.04	c.2.1.2	60965
2ts1	419	63.16		
2f48A	555	64.23	c.89.1.1	132915
2czdA	208	64.37	c.1.2.3	131045
1h3fA	432	67.30	c.26.1.1,d.66.1.4	76631,76632
1piiA	452	71.38	c.1.2.4,c.1.2.4	28559,28563
1pii	452	71.77		
2bo1A	101	72.64		
2vdwA	302	72.68		
1us5A	314	77.52	c.94.1.1	99856
2gasA	307	77.99		
2z08A	137	78.49		
1tml	286	79.28		
2h00A	254	79.41	c.66.1.54	135925
3b5vA	248	80.78		
2c29D	337	82.55		
1rqlA	267	85.05	c.108.1.3	97750
1rhcA	330	85.59	c.1.16.3	97468
1a53A	247	87.53	c.1.2.4	28564
2om6A	235	89.56		
1nnlA	225	89.82	c.108.1.4	85906