# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cozA	129	6.88e-12	c.26.1.2	31598
1b6tA	159	9.40e-10	c.26.1.3	31600
1qjcA	158	2.27e-09	c.26.1.3	63328
1od6A	160	1.79e-08	c.26.1.3	86836
1f9aA	168	3.08e-07	c.26.1.3	31602
1lw7A	365	8.21e-07	c.26.1.3,c.37.1.1	74295,74296
1mrzA	293	1.08e-06	b.43.5.1,c.26.1.3	91452,91453
1tfuA	157	3.43e-06	c.26.1.3	106859
1k4mA	213	8.88e-06	c.26.1.3	77258
1kamA	194	3.58e-05	c.26.1.3	72254
1m8jA	181	3.85e-05	c.26.1.3	84875
1yumA	242	6.08e-05		
2h29A	189	7.79e-05		
1ej2A	181	8.71e-05	c.26.1.3	59414
1hybA	181	0.000885	c.26.1.3	61399
1kkuA	279	0.001065	c.26.1.3	72661
2qjoA	341	0.003751		
1nuuA	252	0.01150	c.26.1.3	86209
1kqnA	279	0.01583	c.26.1.3	77492
2qjtA	352	0.01789		
1n2eA	300	0.5385	c.26.1.4	85268
1ihoA	283	2.361	c.26.1.4	62390
1rkxA	357	2.919	c.2.1.2	97631
1v8fA	276	3.272	c.26.1.4	100503
2a84A	300	4.521	c.26.1.4	126389
1wjgA	137	7.979	c.26.2.4	114696
1nnlA	225	9.933	c.108.1.4	85906
1km3A	247	13.68	c.1.2.3	72739
1v47A	349	13.90	b.122.1.3,c.26.1.5	100292,100293
3c1oA	321	21.91		
2vdwA	302	23.45		
1bu5A	147	26.40	c.23.5.1	31155
1h5yA	253	30.36	c.1.2.1	65638
1o1yA	239	32.23	c.23.16.1	86554
2is8A	164	32.67		
2gasA	307	34.92		
2gzmA	267	35.05		
2jfnA	285	36.16		
1tml	286	36.89		
2p4hX	322	39.63		
2pfsA	150	41.09		
2p7iA	250	41.63		
2h00A	254	43.77	c.66.1.54	135925
1zuwA	272	44.48		
1qydA	313	45.04	c.2.1.2	96583
2gkgA	127	45.07		
2r7dA	469	47.48		
2bodX	286	49.49	c.6.1.1	128909
2q1sA	377	50.29		
1he2A	206	50.37	c.2.1.2	60966
2r6jA	318	50.88		
2czdA	208	53.58	c.1.2.3	131045
1orrA	347	55.41	c.2.1.2	93460
1hdoA	206	55.58	c.2.1.2	60965
1jl0A	334	55.80	d.156.1.1	63155
2bogX	286	58.72		
3chvA	284	59.53		
1jilA	420	61.82	c.26.1.1	66745
2jfuA	291	62.68		
2g6tA	306	62.68	c.147.1.1	134717
1ytlA	174	64.15	c.31.1.6	124008
1i4nA	251	66.06	c.1.2.4	71114
1n2sA	299	66.19	c.2.1.2	79857
1wq3A	322	66.50		
2z08A	137	66.74		
1a53	247	67.33		
2gm3A	175	67.36	c.26.2.4	135354
3c6cA	316	68.35		
2g4rA	160	71.36		
1qycA	308	71.92	c.2.1.2	96581
1ajaA	449	74.15	c.76.1.1	35010
1yksA	440	76.04	c.37.1.14,c.37.1.14	123561,123562
1gesA	450	78.25	c.3.1.5,c.3.1.5,d.87.1.1	30473,30474,40168
1y42X	392	79.45		
2ebuA	112	89.11		
1l6rA	227	89.98	c.108.1.10	77768