# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yumA	242	6.10e-17		
1qjcA	158	1.09e-16	c.26.1.3	63328
1tfuA	157	1.72e-16	c.26.1.3	106859
2h29A	189	3.30e-16		
1k4mA	213	6.56e-16	c.26.1.3	77258
1od6A	160	8.61e-16	c.26.1.3	86836
1ej2A	181	2.22e-15	c.26.1.3	59414
1kamA	194	5.27e-15	c.26.1.3	72254
1f9aA	168	1.57e-14	c.26.1.3	31602
1lw7A	365	4.12e-14	c.26.1.3,c.37.1.1	74295,74296
1kqnA	279	4.74e-14	c.26.1.3	77492
1nuuA	252	5.43e-14	c.26.1.3	86209
1cozA	129	1.87e-13	c.26.1.2	31598
2qjoA	341	2.78e-13		
1m8jA	181	8.80e-13	c.26.1.3	84875
1mrzA	293	2.52e-12	b.43.5.1,c.26.1.3	91452,91453
2qjtA	352	6.02e-10		
1ihoA	283	7.44e-05	c.26.1.4	62390
1n2eA	300	0.000283	c.26.1.4	85268
1jhdA	396	0.000316	b.122.1.3,c.26.1.5	66712,66713
1v8fA	276	0.002678	c.26.1.4	100503
2yxnA	322	0.003829		
1v47A	349	0.004940	b.122.1.3,c.26.1.5	100292,100293
2a84A	300	0.006612	c.26.1.4	126389
1r6xA	395	0.02200	b.122.1.3,c.26.1.5	97167,97168
4ts1A	319	0.02542	c.26.1.1	31565
1wq3A	322	0.02671		
2cybA	323	0.1030		
2ag6A	314	0.2009		
2cyaA	364	0.3042		
1h3fA	432	0.4479	c.26.1.1,d.66.1.4	76631,76632
2pidA	356	0.4912		
2ip1A	432	0.6412		
1y42X	392	0.7271		
1yi8A	351	0.8957		
1i6lA	328	1.929	c.26.1.1	66041
2j5bA	348	3.558		
2j4dA	525	4.064		
1x6vA	630	5.537	b.122.1.3,c.26.1.5,c.37.1.4	121755,121756,121757
1n3lA	372	5.581	c.26.1.1	79966
1owlA	484	6.737	a.99.1.1,c.28.1.1	93647,93648
1nzjA	298	7.246	c.26.1.1	92377
1wjgA	137	8.782	c.26.2.4	114696
1zhaA	267	10.07		
2qkfA	280	11.48		
1w3iA	293	11.88	c.1.10.1	109152
1np7A	489	12.17	a.99.1.1,c.28.1.1	80677,80678
2a5hA	416	13.52		
2blnA	305	13.55	b.46.1.1,c.65.1.1	128734,128735
2r91A	286	14.49		
1s3iA	310	14.89	b.46.1.1,c.65.1.1	98435,98436
1tezA	474	15.09	a.99.1.1,c.28.1.1	112409,112410
2vc6A	292	15.52		
2ojpA	292	16.33		
2p2sA	336	16.61		
2ehhA	294	17.06		
2nuwA	288	17.68		
2z08A	137	18.11		
3c4vA	426	18.14		
1woyA	500	18.45	a.27.1.1,c.26.1.1	121130,121131
2rfgA	297	20.36		
2nwrA	267	22.14		
2purA	292	22.16		
1pe1A	267	22.91	c.1.10.4	94591
1efvA	315	23.79	c.26.2.3,c.31.1.2	31633,31728
1jxhA	288	23.99	c.72.1.2	67415
2d5bA	500	26.18	a.27.1.1,c.26.1.1	131268,131269
3ciwA	348	26.24		
2q88A	257	26.66		
1li5A	461	28.50	a.27.1.1,c.26.1.1	73912,73913
1oywA	523	28.51	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
2r8wA	332	29.82		
2h4aA	325	30.17		
2bonA	332	30.21		
1yxyA	234	30.37	c.1.2.5	124203
1qtqA	553	31.35	b.53.1.2,c.26.1.1	26940,31579
1xkyA	301	31.60	c.1.10.1	122094
1jmvA	141	33.37	c.26.2.4	66897
1hw6A	278	33.76	c.1.7.1	61296
1u7pA	164	34.00	c.108.1.17	113095
1qwjA	229	34.16	c.68.1.13	96478
2atsA	292	36.04	c.1.10.1	127306
2gm3A	175	36.97	c.26.2.4	135354
2hjpA	290	37.20		
1o5kA	306	37.97	c.1.10.1	92504
2cycA	375	38.19		
2bw0A	329	38.40	b.46.1.1,c.65.1.1	129303,129304
1usgA	346	38.94	c.93.1.1	99864
1piiA	452	40.72	c.1.2.4,c.1.2.4	28559,28563
1xo1A	291	40.99	a.60.7.1,c.120.1.2	18086,33356
1u3dA	509	41.09	a.99.1.1,c.28.1.1	107638,107639
1iowA	306	41.22	c.30.1.2,d.142.1.1	31713,41481
3dfrA	162	41.38	c.71.1.1	34880
1v25A	541	43.18	e.23.1.1	108275
1ekeA	230	44.00	c.55.3.1	33572
1tq8A	163	44.65	c.26.2.4	107204
1r6uA	437	44.96	c.26.1.1	97163
1xt8A	292	47.98	c.94.1.1	122293
2q0sA	216	48.44		
3b4uA	294	49.03		
1omoA	322	50.44	c.2.1.13	104017
2va1A	256	51.69		
2rebA	352	51.71	c.37.1.11,d.48.1.1	32282,38767
1iow	306	54.38		
1j09A	468	56.25	a.97.1.1,c.26.1.1	77025,77026
1k77A	260	57.19	c.1.15.5	72096
2bg5A	324	57.31		
1z15A	344	57.67		
2r14A	377	58.09		
1pujA	282	58.16	c.37.1.8	88294
2zcuA	286	59.55		
2v9dA	343	59.92		
1yx1A	264	62.97	c.1.15.7	124169
1v5xA	203	63.92	c.1.2.4	100377
2amhA	207	64.75	c.51.4.2	127019
1aj2	282	65.08		
1v93A	296	65.22	c.1.23.1	100532
2jgyA	279	65.53		
2hcrA	326	66.10		
3d0cA	314	66.13		
2pfsA	150	69.46		
1fecA	490	69.47	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
1xg4A	295	69.67		
2d5rA	252	70.32		
1g0cA	364	70.72	c.1.8.3	60165
1j5pA	253	71.17	d.81.1.3,c.2.1.3	71577,83092
2pzmA	330	71.92		
1tfr	305	73.18		
2vefA	314	75.65		
2zjdA	130	75.98		
2ahoA	414	76.12	b.43.3.1,b.44.1.1,c.37.1.8	126767,126768,126769
1tqjA	230	76.21	c.1.2.2	107228
1k1xA	659	76.63	a.8.3.2,b.30.5.8,c.6.2.2	84279,84280,84281
2j07A	420	77.18	a.99.1.1,c.28.1.1	137891,137892
1xgkA	352	77.29	c.2.1.2	115286
2qh8A	302	78.64		
1o60A	292	78.85	c.1.10.4	92532
1s2oA	244	79.42	c.108.1.10	118846
1ipaA	274	79.85	c.116.1.1,d.79.3.3	71254,71255
1xp8A	366	80.37	c.37.1.11,d.48.1.1	115735,115736
1xw8A	252	80.64	c.6.2.5	116111
1vhyA	257	81.15	b.122.1.2,c.116.1.5	100714,100715
1x7dA	350	84.06	c.2.1.13	114927
1fxjA	331	85.76	b.81.1.4,c.68.1.5	28062,34520
2ieeA	271	86.24		
2q07A	306	88.80		
2izzA	322	89.78		
3bh1A	507	89.98