# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yumA 242 8.69e-15 1qjcA 158 1.98e-14 c.26.1.3 63328 1tfuA 157 3.46e-14 c.26.1.3 106859 1k4mA 213 3.97e-14 c.26.1.3 77258 2h29A 189 4.45e-14 1od6A 160 1.98e-13 c.26.1.3 86836 1kamA 194 4.05e-13 c.26.1.3 72254 1ej2A 181 7.18e-13 c.26.1.3 59414 1f9aA 168 1.54e-12 c.26.1.3 31602 1nuuA 252 1.65e-12 c.26.1.3 86209 1kqnA 279 4.97e-12 c.26.1.3 77492 1lw7A 365 5.93e-12 c.26.1.3,c.37.1.1 74295,74296 1cozA 129 2.30e-11 c.26.1.2 31598 1m8jA 181 4.88e-11 c.26.1.3 84875 2qjoA 341 9.89e-11 1mrzA 293 1.72e-10 b.43.5.1,c.26.1.3 91452,91453 2qjtA 352 3.95e-08 1ihoA 283 0.000825 c.26.1.4 62390 1jhdA 396 0.001110 b.122.1.3,c.26.1.5 66712,66713 1n2eA 300 0.001475 c.26.1.4 85268 2yxnA 322 0.008376 1v47A 349 0.01015 b.122.1.3,c.26.1.5 100292,100293 1v8fA 276 0.01611 c.26.1.4 100503 2a84A 300 0.03221 c.26.1.4 126389 1r6xA 395 0.03845 b.122.1.3,c.26.1.5 97167,97168 4ts1A 319 0.04649 c.26.1.1 31565 1wq3A 322 0.05362 2cybA 323 0.1207 1h3fA 432 0.3260 c.26.1.1,d.66.1.4 76631,76632 2cyaA 364 0.4579 2ag6A 314 0.5823 1yi8A 351 0.6658 2pidA 356 1.019 2ip1A 432 1.232 1i6lA 328 2.364 c.26.1.1 66041 1y42X 392 2.663 1x6vA 630 2.698 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2ehhA 294 3.506 2vc6A 292 3.591 1nzjA 298 3.646 c.26.1.1 92377 2ojpA 292 4.238 2rfgA 297 4.899 2atsA 292 5.223 c.1.10.1 127306 2purA 292 5.421 1w3iA 293 6.541 c.1.10.1 109152 3d0cA 314 6.922 1o5kA 306 7.189 c.1.10.1 92504 1n3lA 372 7.474 c.26.1.1 79966 2z08A 137 7.507 2nuwA 288 7.774 2j5bA 348 8.026 2r91A 286 9.142 1wjgA 137 10.85 c.26.2.4 114696 1xkyA 301 11.05 c.1.10.1 122094 1bf6A 291 11.33 c.1.9.3 29065 1x7oA 287 11.72 2v9dA 343 12.91 1zhaA 267 13.43 3ciwA 348 15.70 2r8wA 332 16.25 1tqjA 230 19.73 c.1.2.2 107228 1u7pA 164 20.28 c.108.1.17 113095 2qkfA 280 20.83 2bg5A 324 22.22 1hl2A 297 23.12 c.1.10.1 83581 3c4vA 426 23.42 2j4dA 525 23.52 1oywA 523 25.16 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2blnA 305 26.71 b.46.1.1,c.65.1.1 128734,128735 1u3dA 509 26.90 a.99.1.1,c.28.1.1 107638,107639 3b4uA 294 27.02 2nwrA 267 27.36 2r14A 377 30.67 1pujA 282 31.17 c.37.1.8 88294 1f74A 293 31.55 c.1.10.1 29079 2pfsA 150 33.14 1owlA 484 33.28 a.99.1.1,c.28.1.1 93647,93648 1rd5A 262 34.35 c.1.2.4 111772 1tq8A 163 34.84 c.26.2.4 107204 2qh8A 302 37.60 2p2sA 336 37.85 1jmvA 141 39.76 c.26.2.4 66897 1tezA 474 40.71 a.99.1.1,c.28.1.1 112409,112410 1r6uA 437 41.94 c.26.1.1 97163 1pe1A 267 42.19 c.1.10.4 94591 1np7A 489 42.93 a.99.1.1,c.28.1.1 80677,80678 1v93A 296 44.83 c.1.23.1 100532 2jgyA 279 44.97 2ci1A 275 46.04 1gz0A 253 46.26 c.116.1.1,d.79.3.3 76391,76392 1vyrA 364 46.50 c.1.4.1 108906 1wv2A 265 47.56 c.1.31.1 114910 2cycA 375 48.56 1a53A 247 51.89 c.1.2.4 28564 2rebA 352 52.55 c.37.1.11,d.48.1.1 32282,38767 1efvA 315 52.98 c.26.2.3,c.31.1.2 31633,31728 1qtqA 553 53.41 b.53.1.2,c.26.1.1 26940,31579 2bogX 286 54.06 1k77A 260 54.58 c.1.15.5 72096 2j07A 420 54.72 a.99.1.1,c.28.1.1 137891,137892 1geqA 248 55.86 c.1.2.4 28589 1yxyA 234 56.35 c.1.2.5 124203 1bykA 255 57.79 c.93.1.1 35706 1m5wA 243 58.64 c.1.24.1 84836 2gouA 365 59.60 1v25A 541 59.90 e.23.1.1 108275 2hjpA 290 59.91 1g0cA 364 60.33 c.1.8.3 60165 2g0wA 296 60.53 c.1.15.4 134503 1j09A 468 61.00 a.97.1.1,c.26.1.1 77025,77026 1v6tA 255 62.07 c.6.2.5 113550 2zjdA 130 62.28 1zp4A 304 64.25 1li5A 461 64.79 a.27.1.1,c.26.1.1 73912,73913 2gwgA 350 66.62 c.1.9.15 135805 1t5iA 172 67.24 c.37.1.19 106450 1gnuA 117 67.48 d.15.1.3 65403 1q6oA 216 68.58 c.1.2.3 95986 2ax4A 198 70.41 2d5bA 500 70.46 a.27.1.1,c.26.1.1 131268,131269 1piiA 452 72.03 c.1.2.4,c.1.2.4 28559,28563 2dumA 170 74.92 1x38A 602 75.67 c.1.8.7,c.23.11.1 121655,121656 2pcqA 283 76.22 2ox1A 196 76.38 1ujpA 271 76.52 c.1.2.4 99462 3bh1A 507 76.96 1xg4A 295 77.19 2couA 109 77.26 3b5vA 248 77.48 2zcuA 286 79.03 2pr7A 137 79.92 3cu2A 237 80.22 1vhyA 257 80.50 b.122.1.2,c.116.1.5 100714,100715 2va1A 256 80.66 1dqwA 267 81.50 c.1.2.3 28551 1suwA 249 81.97 e.52.1.1 106027 1vhwA 253 82.24 c.56.2.1 100706 1z41A 338 83.46 c.1.4.1 124421 1eo6A 117 83.54 d.15.1.3 37609 1v5xA 203 83.82 c.1.2.4 100377 2am1A 454 84.05 1o60A 292 84.61 c.1.10.4 92532 2d5rA 252 85.47 1mjhA 162 86.08 c.26.2.4 31639 1oh0A 131 87.05 d.17.4.3 87004 1wx0A 223 87.36 c.1.10.1 121382