# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yumA 242 1.19e-19 1qjcA 158 3.98e-19 c.26.1.3 63328 2h29A 189 5.74e-19 1tfuA 157 1.12e-18 c.26.1.3 106859 1k4mA 213 1.22e-18 c.26.1.3 77258 1od6A 160 1.15e-17 c.26.1.3 86836 1ej2A 181 1.67e-17 c.26.1.3 59414 1kamA 194 3.20e-17 c.26.1.3 72254 1nuuA 252 7.46e-17 c.26.1.3 86209 1f9aA 168 1.33e-16 c.26.1.3 31602 1lw7A 365 1.82e-16 c.26.1.3,c.37.1.1 74295,74296 1kqnA 279 3.65e-16 c.26.1.3 77492 2qjoA 341 1.03e-15 1cozA 129 3.25e-15 c.26.1.2 31598 1m8jA 181 6.11e-15 c.26.1.3 84875 1mrzA 293 4.79e-14 b.43.5.1,c.26.1.3 91452,91453 2qjtA 352 1.79e-11 1ihoA 283 4.01e-05 c.26.1.4 62390 1jhdA 396 0.000152 b.122.1.3,c.26.1.5 66712,66713 1n2eA 300 0.000281 c.26.1.4 85268 1v8fA 276 0.001890 c.26.1.4 100503 1v47A 349 0.004854 b.122.1.3,c.26.1.5 100292,100293 2yxnA 322 0.005232 2a84A 300 0.006648 c.26.1.4 126389 1r6xA 395 0.01694 b.122.1.3,c.26.1.5 97167,97168 1wq3A 322 0.04757 4ts1A 319 0.05974 c.26.1.1 31565 2cybA 323 0.2316 2cyaA 364 0.3760 1yi8A 351 0.4886 2ip1A 432 0.6046 1y42X 392 0.6368 1h3fA 432 0.7726 c.26.1.1,d.66.1.4 76631,76632 2ag6A 314 0.8785 2pidA 356 1.359 1x6vA 630 2.250 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2z08A 137 2.853 1i6lA 328 3.347 c.26.1.1 66041 2vc6A 292 3.970 1w3iA 293 3.980 c.1.10.1 109152 1wjgA 137 4.011 c.26.2.4 114696 2j4dA 525 5.377 2ehhA 294 5.704 3c4vA 426 6.063 2rfgA 297 6.538 2ojpA 292 8.544 1n3lA 372 9.133 c.26.1.1 79966 2j5bA 348 9.135 2purA 292 9.868 1tq8A 163 10.72 c.26.2.4 107204 3d0cA 314 11.03 1tezA 474 11.08 a.99.1.1,c.28.1.1 112409,112410 1nzjA 298 11.51 c.26.1.1 92377 2qkfA 280 12.27 2r91A 286 12.60 2atsA 292 13.95 c.1.10.1 127306 1owlA 484 14.87 a.99.1.1,c.28.1.1 93647,93648 2r8wA 332 15.21 1o5kA 306 15.32 c.1.10.1 92504 2nuwA 288 16.95 1u7pA 164 17.11 c.108.1.17 113095 1xkyA 301 17.27 c.1.10.1 122094 3ciwA 348 18.03 1np7A 489 18.06 a.99.1.1,c.28.1.1 80677,80678 1zhaA 267 18.98 2blnA 305 21.02 b.46.1.1,c.65.1.1 128734,128735 2v3vA 723 23.63 2v9dA 343 25.58 1jmvA 141 26.99 c.26.2.4 66897 2gm3A 175 27.08 c.26.2.4 135354 1yxyA 234 29.47 c.1.2.5 124203 1u3dA 509 30.35 a.99.1.1,c.28.1.1 107638,107639 2cycA 375 31.16 1g0cA 364 33.37 c.1.8.3 60165 1v25A 541 33.48 e.23.1.1 108275 2bg5A 324 35.50 1mjhA 162 36.38 c.26.2.4 31639 2pfsA 150 39.93 2p2sA 336 41.11 2h4aA 325 42.24 1hlvA 131 42.54 a.4.1.7,a.4.1.7 65854,65855 3b4uA 294 42.64 1s3iA 310 44.43 b.46.1.1,c.65.1.1 98435,98436 2zjdA 130 44.82 1v5xA 203 46.03 c.1.2.4 100377 1x38A 602 48.18 c.1.8.7,c.23.11.1 121655,121656 1gnuA 117 48.87 d.15.1.3 65403 1s2oA 244 49.61 c.108.1.10 118846 1yx1A 264 49.98 c.1.15.7 124169 1oywA 523 50.10 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1xo1A 291 50.70 a.60.7.1,c.120.1.2 18086,33356 1o08A 221 50.79 c.108.1.6 86525 1usgA 346 51.88 c.93.1.1 99864 2j07A 420 52.43 a.99.1.1,c.28.1.1 137891,137892 1rd5A 262 53.38 c.1.2.4 111772 1eo6A 117 53.79 d.15.1.3 37609 3bh1A 507 54.27 1tqjA 230 54.30 c.1.2.2 107228 1s5aA 150 54.48 d.17.4.10 98525 2q88A 257 54.89 1k77A 260 56.48 c.1.15.5 72096 2d5bA 500 57.90 a.27.1.1,c.26.1.1 131268,131269 1mxgA 435 57.99 b.71.1.1,c.1.8.1 85193,85194 1oh0A 131 58.71 d.17.4.3 87004 2r14A 377 59.00 1wviA 257 59.58 c.108.1.14 114915 1dqwA 267 59.65 c.1.2.3 28551 2a5hA 416 60.00 2d5rA 252 64.00 2fltA 149 64.46 1woyA 500 65.45 a.27.1.1,c.26.1.1 121130,121131 2va1A 256 66.27 2jgyA 279 66.68 2bogX 286 67.04 2hszA 243 67.10 c.108.1.6 136726 2q0sA 216 67.42 2hzfA 114 67.63 1efvA 315 72.05 c.26.2.3,c.31.1.2 31633,31728 2dumA 170 74.34 2ox1A 196 77.00 1pe1A 267 83.27 c.1.10.4 94591 1qb7A 236 83.73 c.61.1.1 34087 2gouA 365 87.18 1n3yA 198 87.29 c.62.1.1 79976 1fecA 490 88.72 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1ra9 159 89.74