# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1qjcA 158 4.24e-16 c.26.1.3 63328 1tfuA 157 9.20e-16 c.26.1.3 106859 1yumA 242 3.62e-15 1od6A 160 7.55e-15 c.26.1.3 86836 2h29A 189 8.30e-15 1ej2A 181 1.01e-14 c.26.1.3 59414 1k4mA 213 2.63e-14 c.26.1.3 77258 1f9aA 168 3.04e-13 c.26.1.3 31602 1kamA 194 3.37e-13 c.26.1.3 72254 1cozA 129 1.84e-12 c.26.1.2 31598 1lw7A 365 3.43e-12 c.26.1.3,c.37.1.1 74295,74296 1nuuA 252 4.70e-12 c.26.1.3 86209 1m8jA 181 9.16e-12 c.26.1.3 84875 1mrzA 293 1.13e-11 b.43.5.1,c.26.1.3 91452,91453 1kqnA 279 1.20e-11 c.26.1.3 77492 2qjoA 341 2.90e-11 2qjtA 352 4.97e-09 1ihoA 283 0.000350 c.26.1.4 62390 1n2eA 300 0.002036 c.26.1.4 85268 1jhdA 396 0.002927 b.122.1.3,c.26.1.5 66712,66713 1v8fA 276 0.005710 c.26.1.4 100503 2a84A 300 0.02889 c.26.1.4 126389 1v47A 349 0.03588 b.122.1.3,c.26.1.5 100292,100293 2yxnA 322 0.1244 1r6xA 395 0.1780 b.122.1.3,c.26.1.5 97167,97168 1wq3A 322 1.030 4ts1A 319 1.077 c.26.1.1 31565 1tezA 474 1.207 a.99.1.1,c.28.1.1 112409,112410 1wjgA 137 1.548 c.26.2.4 114696 2j4dA 525 1.581 2z08A 137 1.650 2pidA 356 1.924 1owlA 484 2.173 a.99.1.1,c.28.1.1 93647,93648 1np7A 489 2.464 a.99.1.1,c.28.1.1 80677,80678 2ip1A 432 3.079 2cybA 323 3.997 1u3dA 509 5.077 a.99.1.1,c.28.1.1 107638,107639 2j07A 420 6.078 a.99.1.1,c.28.1.1 137891,137892 2qkfA 280 6.340 2ag6A 314 6.467 1s3iA 310 7.224 b.46.1.1,c.65.1.1 98435,98436 2blnA 305 7.457 b.46.1.1,c.65.1.1 128734,128735 2cyaA 364 8.308 1jmvA 141 9.137 c.26.2.4 66897 1k77A 260 9.660 c.1.15.5 72096 1mjhA 162 10.08 c.26.2.4 31639 1zhaA 267 10.13 1y42X 392 10.67 1dnpA 471 13.66 a.99.1.1,c.28.1.1 18775,31630 1h3fA 432 14.88 c.26.1.1,d.66.1.4 76631,76632 1w3iA 293 15.85 c.1.10.1 109152 3c4vA 426 16.58 2va1A 256 18.87 2gouA 365 21.82 1vflA 356 23.37 c.1.9.1 120041 2pg3A 232 24.88 1qmgA 524 26.63 a.100.1.2,c.2.1.6 18785,30182 2r14A 377 26.87 2hjpA 290 27.11 2ahoA 414 27.87 b.43.3.1,b.44.1.1,c.37.1.8 126767,126768,126769 2dumA 170 27.91 2ojpA 292 28.25 1tq8A 163 28.88 c.26.2.4 107204 1pe1A 267 28.91 c.1.10.4 94591 1jxhA 288 29.82 c.72.1.2 67415 1hw6A 278 30.28 c.1.7.1 61296 1x6vA 630 33.30 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2r91A 286 34.32 2nuwA 288 34.57 2ehhA 294 35.99 2j5bA 348 36.29 1yxyA 234 36.89 c.1.2.5 124203 1xg4A 295 37.70 2nwrA 267 38.64 2ox1A 196 40.40 2purA 292 40.56 2vc6A 292 40.71 2bw0A 329 42.26 b.46.1.1,c.65.1.1 129303,129304 2atsA 292 47.21 c.1.10.1 127306 2gm3A 175 48.19 c.26.2.4 135354 1vyrA 364 50.04 c.1.4.1 108906 1efvA 315 50.36 c.26.2.3,c.31.1.2 31633,31728 2i5gA 325 50.40 2zcuA 286 53.73 7odcA 424 54.24 b.49.2.3,c.1.6.1 26488,28650 1wv2A 265 54.43 c.1.31.1 114910 2p4zA 284 54.50 2pn1A 331 58.79 1fmtA 314 59.12 b.46.1.1,c.65.1.1 25758,34174 3ciwA 348 59.88 1u7pA 164 61.02 c.108.1.17 113095 1n3yA 198 63.97 c.62.1.1 79976 1ad1A 266 64.04 c.1.21.1 29668 1bf6A 291 66.01 c.1.9.3 29065 1y0eA 223 66.15 c.1.2.5 116297 2h4aA 325 67.17 2dqwA 294 67.76 1icpA 376 68.76 c.1.4.1 62270 2ddrA 306 70.04 d.151.1.3 131398 1xkyA 301 70.75 c.1.10.1 122094 2hjsA 340 70.93 c.2.1.3,d.81.1.1 136547,136548 2aioA 269 72.76 d.157.1.1 126829 1gu7A 364 73.27 b.35.1.2,c.2.1.1 83321,83322 1vkhA 273 73.78 c.69.1.32 108662 2amhA 207 74.44 c.51.4.2 127019 2rfgA 297 74.52 2p2sA 336 74.61 3d02A 303 74.80 2ob3A 330 75.17 2pfsA 150 76.08 1usgA 346 77.75 c.93.1.1 99864 1iow 306 79.53 1v93A 296 80.34 c.1.23.1 100532 2p5xA 230 80.36 2qh8A 302 80.61 1ub3A 220 83.67 c.1.10.1 88395 1knwA 425 84.00 b.49.2.3,c.1.6.1 90969,90970 1ru8A 232 85.93 c.26.2.1 97849 3c8mA 331 86.44 2jgyA 279 86.52 1qwkA 317 86.88 c.1.7.1 96482 1ig3A 263 87.67 b.82.6.1,c.100.1.1 62358,62359 1aj2 282 89.10 1xw8A 252 89.76 c.6.2.5 116111