# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1od6A 160 6.82e-13 c.26.1.3 86836 1qjcA 158 6.85e-13 c.26.1.3 63328 1tfuA 157 4.14e-12 c.26.1.3 106859 1yumA 242 4.47e-12 1k4mA 213 9.64e-12 c.26.1.3 77258 1kamA 194 1.56e-11 c.26.1.3 72254 2h29A 189 3.10e-11 1f9aA 168 4.30e-11 c.26.1.3 31602 1cozA 129 4.16e-10 c.26.1.2 31598 1ej2A 181 4.98e-10 c.26.1.3 59414 1mrzA 293 8.22e-10 b.43.5.1,c.26.1.3 91452,91453 1m8jA 181 1.91e-09 c.26.1.3 84875 1nuuA 252 2.35e-09 c.26.1.3 86209 1kqnA 279 4.52e-09 c.26.1.3 77492 1lw7A 365 6.29e-09 c.26.1.3,c.37.1.1 74295,74296 2qjoA 341 5.80e-08 2qjtA 352 0.000120 1g8fA 511 0.03924 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2a84A 300 0.06226 c.26.1.4 126389 1n2eA 300 0.06583 c.26.1.4 85268 1v47A 349 0.07758 b.122.1.3,c.26.1.5 100292,100293 1v8fA 276 0.08309 c.26.1.4 100503 1ihoA 283 0.1329 c.26.1.4 62390 2cyaA 364 0.1908 2yxnA 322 0.4762 1r6xA 395 0.7430 b.122.1.3,c.26.1.5 97167,97168 4ts1A 319 0.7819 c.26.1.1 31565 1j1uA 306 0.7945 c.26.1.1 83980 1n3lA 372 0.9731 c.26.1.1 79966 1jhdA 396 1.367 b.122.1.3,c.26.1.5 66712,66713 2cybA 323 1.487 1owlA 484 2.762 a.99.1.1,c.28.1.1 93647,93648 1wq3A 322 3.247 1h3fA 432 3.321 c.26.1.1,d.66.1.4 76631,76632 2j5bA 348 4.593 2ip1A 432 5.723 1xt8A 292 5.774 c.94.1.1 122293 1jmvA 141 6.879 c.26.2.4 66897 1r6uA 437 7.513 c.26.1.1 97163 1wjgA 137 7.595 c.26.2.4 114696 1tezA 474 8.117 a.99.1.1,c.28.1.1 112409,112410 2z08A 137 8.873 2ag6A 314 9.765 1qnf 484 10.05 1y42X 392 11.84 2vc6A 292 12.09 2rfgA 297 12.20 1qmgA 524 12.58 a.100.1.2,c.2.1.6 18785,30182 1rd5A 262 14.57 c.1.2.4 111772 1fkx 349 17.33 2ojpA 292 18.83 3d0cA 314 19.18 2r91A 286 19.19 2ehhA 294 20.15 1w3iA 293 20.37 c.1.10.1 109152 2atsA 292 20.70 c.1.10.1 127306 2r8wA 332 21.16 1ru8A 232 21.54 c.26.2.1 97849 2ts1 419 22.32 1lst 239 23.25 2purA 292 23.38 1i6lA 328 23.56 c.26.1.1 66041 2pidA 356 23.83 2a5hA 416 24.02 2j07A 420 24.38 a.99.1.1,c.28.1.1 137891,137892 2nuwA 288 25.11 2a6nA 292 25.75 c.1.10.1 126289 1xkyA 301 26.13 c.1.10.1 122094 2v25A 259 27.31 1a4mA 349 27.60 c.1.9.1 29014 2a6lA 292 28.10 c.1.10.1 126285 1np7A 489 28.95 a.99.1.1,c.28.1.1 80677,80678 1s3iA 310 29.74 b.46.1.1,c.65.1.1 98435,98436 1d2rA 326 29.77 c.26.1.1 31572 1zgdA 312 30.23 1uanA 227 30.41 c.134.1.1 99135 1jilA 420 32.01 c.26.1.1 66745 2v9dA 343 32.35 1g67A 225 33.14 c.1.3.1 60311 1u3dA 509 33.17 a.99.1.1,c.28.1.1 107638,107639 1s0uA 408 33.19 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 2blnA 305 34.31 b.46.1.1,c.65.1.1 128734,128735 1qycA 308 34.55 c.2.1.2 96581 2c4nA 250 35.65 c.108.1.14 129837 1t5iA 172 35.68 c.37.1.19 106450 1wdnA 226 36.35 c.94.1.1 35816 1dhpA 292 36.41 c.1.10.1 29097 1v6tA 255 38.31 c.6.2.5 113550 1tqjA 230 39.48 c.1.2.2 107228 1m1nB 522 40.74 c.92.2.3 78418 1yi8A 351 40.77 1ho1A 242 42.70 c.1.24.1 61097 1jx6A 342 44.01 c.93.1.1 67406 1o5kA 306 44.14 c.1.10.1 92504 1hzpA 335 47.95 c.95.1.2,c.95.1.2 61455,61456 1mumA 295 49.01 c.1.12.7 85108 2j4dA 525 50.76 1e7rA 321 51.76 c.2.1.2 29808 3bl6A 230 54.51 1ujpA 271 54.55 c.1.2.4 99462 2ac2A 309 54.79 1gggA 226 55.86 c.94.1.1 35817 1yxyA 234 55.87 c.1.2.5 124203 1o60A 292 56.01 c.1.10.4 92532 2cycA 375 57.26 1ir6A 424 57.67 c.107.1.2 71342 1w1iE 357 58.40 c.1.9.1 109051 1n7kA 234 59.03 c.1.10.1 85374 2om6A 235 59.83 1m5wA 243 60.41 c.1.24.1 84836 2hmcA 344 62.42 2yzrA 330 62.45 2napA 723 62.93 b.52.2.2,c.81.1.1 26926,35334 1xg4A 295 65.14 2c3zA 222 66.61 2nvoA 535 68.93 2ggsA 273 70.48 1rrmA 386 71.66 e.22.1.2 105081 1i2cA 404 72.31 c.2.1.2 83666 2db3A 434 73.13 2nzlA 392 73.68 1zejA 293 75.43 2pfsA 150 76.13 2r14A 377 76.24 1ujqA 305 76.82 c.1.12.7 99463 2v3vA 723 77.01 2ieeA 271 78.78 2gmwA 211 81.59 1mixA 206 81.80 a.11.2.1,b.55.1.5 79166,79167 2h1vA 310 82.44 1tv8A 340 85.02 c.1.28.3 107352 2bw0A 329 86.37 b.46.1.1,c.65.1.1 129303,129304 1oywA 523 87.40 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2qkfA 280 87.85 1hw6A 278 88.58 c.1.7.1 61296