# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1od6A 160 3.74e-14 c.26.1.3 86836 1qjcA 158 4.53e-14 c.26.1.3 63328 1tfuA 157 1.77e-13 c.26.1.3 106859 1yumA 242 2.41e-13 1k4mA 213 5.73e-13 c.26.1.3 77258 1kamA 194 7.23e-13 c.26.1.3 72254 1f9aA 168 9.95e-13 c.26.1.3 31602 2h29A 189 1.41e-12 1ej2A 181 2.69e-11 c.26.1.3 59414 1cozA 129 4.69e-11 c.26.1.2 31598 1m8jA 181 9.19e-11 c.26.1.3 84875 1mrzA 293 1.53e-10 b.43.5.1,c.26.1.3 91452,91453 1lw7A 365 1.61e-10 c.26.1.3,c.37.1.1 74295,74296 1nuuA 252 1.79e-10 c.26.1.3 86209 1kqnA 279 4.80e-10 c.26.1.3 77492 2qjoA 341 2.41e-09 2qjtA 352 7.99e-05 1n2eA 300 0.05663 c.26.1.4 85268 1v8fA 276 0.07393 c.26.1.4 100503 1g8fA 511 0.07469 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2a84A 300 0.08680 c.26.1.4 126389 1ihoA 283 0.1314 c.26.1.4 62390 1v47A 349 0.1798 b.122.1.3,c.26.1.5 100292,100293 2cyaA 364 0.2530 1j1uA 306 1.446 c.26.1.1 83980 1n3lA 372 2.149 c.26.1.1 79966 2cybA 323 3.051 4ts1A 319 3.604 c.26.1.1 31565 2yxnA 322 4.370 2ip1A 432 5.735 1jhdA 396 5.891 b.122.1.3,c.26.1.5 66712,66713 1owlA 484 6.976 a.99.1.1,c.28.1.1 93647,93648 1xt8A 292 7.504 c.94.1.1 122293 1r6xA 395 7.522 b.122.1.3,c.26.1.5 97167,97168 1wjgA 137 7.575 c.26.2.4 114696 2z08A 137 8.027 2j5bA 348 9.413 1jmvA 141 9.96 c.26.2.4 66897 2ag6A 314 10.84 1wq3A 322 10.96 1v6tA 255 12.13 c.6.2.5 113550 2vc6A 292 12.41 1r6uA 437 13.82 c.26.1.1 97163 1i6lA 328 13.99 c.26.1.1 66041 2ojpA 292 14.03 2rfgA 297 14.22 1a4mA 349 14.88 c.1.9.1 29014 1fkx 349 17.00 2purA 292 18.57 2r8wA 332 18.80 1o5kA 306 19.45 c.1.10.1 92504 1xkyA 301 19.68 c.1.10.1 122094 2v25A 259 19.91 1qnf 484 20.11 1oywA 523 20.48 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2atsA 292 20.86 c.1.10.1 127306 2ehhA 294 22.50 1tezA 474 24.97 a.99.1.1,c.28.1.1 112409,112410 2v9dA 343 25.32 2a6lA 292 26.76 c.1.10.1 126285 1rd5A 262 27.03 c.1.2.4 111772 3d0cA 314 27.89 1dhpA 292 28.77 c.1.10.1 29097 1uanA 227 28.83 c.134.1.1 99135 2a6nA 292 29.66 c.1.10.1 126289 2yzrA 330 30.44 1hzpA 335 32.69 c.95.1.2,c.95.1.2 61455,61456 1d2rA 326 33.10 c.26.1.1 31572 1t5iA 172 33.15 c.37.1.19 106450 1h3fA 432 33.85 c.26.1.1,d.66.1.4 76631,76632 1y42X 392 34.19 2napA 723 34.42 b.52.2.2,c.81.1.1 26926,35334 2j07A 420 34.53 a.99.1.1,c.28.1.1 137891,137892 1jx6A 342 37.17 c.93.1.1 67406 1w1iE 357 37.17 c.1.9.1 109051 1wdnA 226 39.34 c.94.1.1 35816 1tqjA 230 40.00 c.1.2.2 107228 1lst 239 40.21 1u3dA 509 42.01 a.99.1.1,c.28.1.1 107638,107639 1ujpA 271 42.87 c.1.2.4 99462 2pidA 356 43.46 1s0uA 408 43.71 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 2db3A 434 45.78 1m1nB 522 48.54 c.92.2.3 78418 2r91A 286 49.29 1w3iA 293 49.37 c.1.10.1 109152 2hqbA 296 50.66 1efvA 315 51.43 c.26.2.3,c.31.1.2 31633,31728 2v3vA 723 52.76 1zgdA 312 53.43 1q6oA 216 53.66 c.1.2.3 95986 1ru8A 232 53.81 c.26.2.1 97849 2gouA 365 53.88 1ho1A 242 55.16 c.1.24.1 61097 2pljA 419 56.40 1zejA 293 57.63 2a5hA 416 60.07 2o1mA 258 61.71 2c3zA 222 62.64 1yxyA 234 63.07 c.1.2.5 124203 1n7kA 234 64.90 c.1.10.1 85374 3bl6A 230 65.60 3crvA 551 66.48 1h1yA 228 67.55 c.1.2.2 76506 2nuwA 288 69.69 1tq8A 163 69.88 c.26.2.4 107204 2hmcA 344 70.38 1jilA 420 71.53 c.26.1.1 66745 2ts1 419 73.65 1gggA 226 74.34 c.94.1.1 35817 1mixA 206 76.11 a.11.2.1,b.55.1.5 79166,79167 1qycA 308 76.51 c.2.1.2 96581 2dztA 248 76.53 1xp3A 307 76.68 c.1.15.1 122210 2r14A 377 77.26 1bykA 255 78.76 c.93.1.1 35706 1fcjA 322 79.98 c.79.1.1 35289 1mzjA 339 80.57 c.95.1.2,c.95.1.2 79700,79701 2yv5A 302 81.57 1m5wA 243 81.63 c.1.24.1 84836 1qtwA 285 82.82 c.1.15.1 29392 2pcqA 283 83.03 2jgyA 279 83.13 1vr6A 350 83.99 c.1.10.4 120439 1i4nA 251 84.23 c.1.2.4 71114 1ir6A 424 86.00 c.107.1.2 71342 2ekcA 262 87.51 2q88A 257 87.61 1mumA 295 89.22 c.1.12.7 85108 2dumA 170 89.42