# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1od6A 160 2.49e-13 c.26.1.3 86836 1qjcA 158 2.91e-13 c.26.1.3 63328 1tfuA 157 7.90e-13 c.26.1.3 106859 1yumA 242 9.03e-13 1k4mA 213 2.53e-12 c.26.1.3 77258 1kamA 194 3.11e-12 c.26.1.3 72254 1f9aA 168 4.84e-12 c.26.1.3 31602 2h29A 189 7.71e-12 1ej2A 181 1.47e-10 c.26.1.3 59414 1cozA 129 1.55e-10 c.26.1.2 31598 1m8jA 181 4.54e-10 c.26.1.3 84875 1lw7A 365 5.11e-10 c.26.1.3,c.37.1.1 74295,74296 1mrzA 293 6.49e-10 b.43.5.1,c.26.1.3 91452,91453 1nuuA 252 6.76e-10 c.26.1.3 86209 1kqnA 279 1.77e-09 c.26.1.3 77492 2qjoA 341 6.21e-09 2qjtA 352 0.000105 1g8fA 511 0.07784 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1n2eA 300 0.07981 c.26.1.4 85268 2a84A 300 0.1009 c.26.1.4 126389 1v8fA 276 0.1076 c.26.1.4 100503 1ihoA 283 0.1716 c.26.1.4 62390 2cyaA 364 0.1995 1v47A 349 0.2616 b.122.1.3,c.26.1.5 100292,100293 1j1uA 306 1.083 c.26.1.1 83980 1n3lA 372 1.461 c.26.1.1 79966 2cybA 323 2.689 4ts1A 319 2.776 c.26.1.1 31565 2yxnA 322 3.683 1xt8A 292 4.785 c.94.1.1 122293 1jhdA 396 4.809 b.122.1.3,c.26.1.5 66712,66713 2ip1A 432 5.273 1owlA 484 6.473 a.99.1.1,c.28.1.1 93647,93648 2z08A 137 7.053 1wjgA 137 7.099 c.26.2.4 114696 1jmvA 141 7.873 c.26.2.4 66897 2j5bA 348 8.494 1wq3A 322 8.642 1r6xA 395 9.198 b.122.1.3,c.26.1.5 97167,97168 1i6lA 328 11.44 c.26.1.1 66041 1v6tA 255 12.50 c.6.2.5 113550 2ag6A 314 13.02 2v25A 259 13.02 1r6uA 437 14.54 c.26.1.1 97163 1a4mA 349 15.34 c.1.9.1 29014 1fkx 349 15.88 2rfgA 297 16.13 2vc6A 292 16.21 2ojpA 292 18.50 1oywA 523 18.98 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1qnf 484 20.16 1lst 239 21.00 2r8wA 332 21.84 1uanA 227 23.75 c.134.1.1 99135 1d2rA 326 23.77 c.26.1.1 31572 1tezA 474 25.02 a.99.1.1,c.28.1.1 112409,112410 1h3fA 432 25.20 c.26.1.1,d.66.1.4 76631,76632 2purA 292 26.48 1jx6A 342 26.59 c.93.1.1 67406 1xkyA 301 27.69 c.1.10.1 122094 2yzrA 330 28.85 1o5kA 306 29.07 c.1.10.1 92504 1y42X 392 29.23 1ujpA 271 29.37 c.1.2.4 99462 1s0uA 408 30.23 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 2atsA 292 30.70 c.1.10.1 127306 2ehhA 294 30.91 2pidA 356 31.35 1m1nB 522 31.47 c.92.2.3 78418 2j07A 420 31.52 a.99.1.1,c.28.1.1 137891,137892 1efvA 315 32.92 c.26.2.3,c.31.1.2 31633,31728 2v9dA 343 33.12 2a6lA 292 37.07 c.1.10.1 126285 1u3dA 509 37.31 a.99.1.1,c.28.1.1 107638,107639 3d0cA 314 38.44 1t5iA 172 38.45 c.37.1.19 106450 1wdnA 226 39.41 c.94.1.1 35816 1hzpA 335 39.76 c.95.1.2,c.95.1.2 61455,61456 1jilA 420 39.87 c.26.1.1 66745 2a6nA 292 40.07 c.1.10.1 126289 1tqjA 230 40.83 c.1.2.2 107228 2o1mA 258 41.13 2hqbA 296 41.33 1rd5A 262 42.64 c.1.2.4 111772 2napA 723 43.04 b.52.2.2,c.81.1.1 26926,35334 1w1iE 357 44.86 c.1.9.1 109051 2a5hA 416 50.80 1yxyA 234 52.17 c.1.2.5 124203 2q88A 257 52.49 1dhpA 292 52.58 c.1.10.1 29097 1ho1A 242 54.46 c.1.24.1 61097 2ts1 419 54.60 2gouA 365 57.30 1w3iA 293 58.21 c.1.10.1 109152 1s3iA 310 58.32 b.46.1.1,c.65.1.1 98435,98436 2db3A 434 58.49 2r91A 286 58.56 1fcjA 322 59.24 c.79.1.1 35289 1gggA 226 59.92 c.94.1.1 35817 2v3vA 723 60.39 1ru8A 232 60.65 c.26.2.1 97849 1tq8A 163 60.82 c.26.2.4 107204 2cycA 375 60.86 2r14A 377 64.29 1prxA 224 64.61 c.47.1.10 33076 2hmcA 344 66.26 1n7kA 234 66.85 c.1.10.1 85374 1q6oA 216 72.00 c.1.2.3 95986 2c3zA 222 73.37 2nuwA 288 73.48 1mzjA 339 73.77 c.95.1.2,c.95.1.2 79700,79701 1qmgA 524 74.07 a.100.1.2,c.2.1.6 18785,30182 1m5wA 243 74.15 c.1.24.1 84836 1zgdA 312 75.06 2dztA 248 75.26 1mixA 206 75.95 a.11.2.1,b.55.1.5 79166,79167 2c4nA 250 78.33 c.108.1.14 129837 1bykA 255 80.48 c.93.1.1 35706 1qycA 308 82.34 c.2.1.2 96581 2jgyA 279 82.91 1ir6A 424 83.25 c.107.1.2 71342 2pfsA 150 85.15 2gruA 368 85.71 2om6A 235 87.88 1h1yA 228 89.52 c.1.2.2 76506 2pljA 419 89.96