# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1od6A 160 1.95e-13 c.26.1.3 86836 1qjcA 158 2.06e-13 c.26.1.3 63328 1tfuA 157 6.19e-13 c.26.1.3 106859 1yumA 242 7.98e-13 1k4mA 213 1.96e-12 c.26.1.3 77258 1kamA 194 2.71e-12 c.26.1.3 72254 1f9aA 168 2.80e-12 c.26.1.3 31602 2h29A 189 4.44e-12 1ej2A 181 7.93e-11 c.26.1.3 59414 1cozA 129 1.60e-10 c.26.1.2 31598 1m8jA 181 2.67e-10 c.26.1.3 84875 1lw7A 365 4.28e-10 c.26.1.3,c.37.1.1 74295,74296 1mrzA 293 4.37e-10 b.43.5.1,c.26.1.3 91452,91453 1nuuA 252 6.03e-10 c.26.1.3 86209 1kqnA 279 1.49e-09 c.26.1.3 77492 2qjoA 341 4.91e-09 2qjtA 352 0.000102 1g8fA 511 0.06754 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1n2eA 300 0.09288 c.26.1.4 85268 1v8fA 276 0.1020 c.26.1.4 100503 2a84A 300 0.1084 c.26.1.4 126389 1ihoA 283 0.1668 c.26.1.4 62390 1v47A 349 0.2069 b.122.1.3,c.26.1.5 100292,100293 2cyaA 364 0.3768 1j1uA 306 1.325 c.26.1.1 83980 1n3lA 372 1.725 c.26.1.1 79966 4ts1A 319 2.542 c.26.1.1 31565 2yxnA 322 2.701 2cybA 323 4.503 1jhdA 396 4.592 b.122.1.3,c.26.1.5 66712,66713 1xt8A 292 4.891 c.94.1.1 122293 1owlA 484 5.564 a.99.1.1,c.28.1.1 93647,93648 2ip1A 432 5.745 1r6xA 395 6.300 b.122.1.3,c.26.1.5 97167,97168 1wq3A 322 7.015 1wjgA 137 8.056 c.26.2.4 114696 2z08A 137 8.165 1jmvA 141 9.672 c.26.2.4 66897 2j5bA 348 10.98 2ojpA 292 11.96 1r6uA 437 12.34 c.26.1.1 97163 1i6lA 328 12.42 c.26.1.1 66041 2vc6A 292 12.61 2ag6A 314 13.98 1v6tA 255 14.48 c.6.2.5 113550 2v25A 259 15.02 1a4mA 349 16.69 c.1.9.1 29014 1fkx 349 16.84 2rfgA 297 16.89 2purA 292 17.36 1o5kA 306 18.13 c.1.10.1 92504 1oywA 523 18.51 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2r8wA 332 19.11 1tezA 474 20.07 a.99.1.1,c.28.1.1 112409,112410 2atsA 292 20.66 c.1.10.1 127306 1qnf 484 21.62 1xkyA 301 22.46 c.1.10.1 122094 2ehhA 294 22.49 1lst 239 22.71 1h3fA 432 24.20 c.26.1.1,d.66.1.4 76631,76632 2v9dA 343 24.75 1y42X 392 25.16 2a6nA 292 26.21 c.1.10.1 126289 2pidA 356 26.61 2yzrA 330 26.68 1uanA 227 27.28 c.134.1.1 99135 2a6lA 292 27.54 c.1.10.1 126285 2j07A 420 29.45 a.99.1.1,c.28.1.1 137891,137892 3d0cA 314 32.60 1jx6A 342 32.94 c.93.1.1 67406 1jilA 420 34.36 c.26.1.1 66745 1dhpA 292 35.35 c.1.10.1 29097 1tqjA 230 36.17 c.1.2.2 107228 1rd5A 262 36.51 c.1.2.4 111772 1s0uA 408 36.56 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 1efvA 315 36.98 c.26.2.3,c.31.1.2 31633,31728 1wdnA 226 37.97 c.94.1.1 35816 2ts1 419 39.90 1hzpA 335 41.06 c.95.1.2,c.95.1.2 61455,61456 1d2rA 326 42.15 c.26.1.1 31572 1u3dA 509 42.61 a.99.1.1,c.28.1.1 107638,107639 1ujpA 271 43.58 c.1.2.4 99462 2db3A 434 45.07 2hqbA 296 45.14 1ru8A 232 45.63 c.26.2.1 97849 2a5hA 416 47.19 2r91A 286 48.14 1m1nB 522 49.06 c.92.2.3 78418 1w3iA 293 49.43 c.1.10.1 109152 2napA 723 51.31 b.52.2.2,c.81.1.1 26926,35334 2o1mA 258 51.36 1t5iA 172 52.75 c.37.1.19 106450 1s3iA 310 53.54 b.46.1.1,c.65.1.1 98435,98436 1fcjA 322 55.73 c.79.1.1 35289 1zgdA 312 55.84 1w1iE 357 55.85 c.1.9.1 109051 1gggA 226 55.89 c.94.1.1 35817 1tq8A 163 62.77 c.26.2.4 107204 2q88A 257 63.93 1q6oA 216 65.18 c.1.2.3 95986 1ho1A 242 65.85 c.1.24.1 61097 2r14A 377 67.51 2gouA 365 70.92 2qulA 290 71.09 1m5wA 243 72.81 c.1.24.1 84836 1mzjA 339 76.11 c.95.1.2,c.95.1.2 79700,79701 1bjwA 382 76.44 c.67.1.1 34349 2c3zA 222 76.56 2nuwA 288 77.69 3crvA 551 77.96 1yxyA 234 78.16 c.1.2.5 124203 2pljA 419 78.40 1bykA 255 78.97 c.93.1.1 35706 1b5pA 385 79.24 c.67.1.1 90403 1zejA 293 79.46 1i4nA 251 80.95 c.1.2.4 71114 2hmcA 344 81.27 2ieeA 271 81.99 2jgyA 279 83.71 1n7kA 234 83.78 c.1.10.1 85374 1lstA 239 84.51 c.94.1.1 35755 1qmgA 524 86.06 a.100.1.2,c.2.1.6 18785,30182 2h1vA 310 86.34 1h1yA 228 87.86 c.1.2.2 76506 2v3vA 723 88.41 3bl6A 230 89.77