# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1qjcA 158 4.73e-15 c.26.1.3 63328 1od6A 160 1.56e-14 c.26.1.3 86836 1tfuA 157 2.83e-14 c.26.1.3 106859 1yumA 242 7.00e-14 1k4mA 213 8.58e-14 c.26.1.3 77258 2h29A 189 1.03e-13 1f9aA 168 1.25e-12 c.26.1.3 31602 1kamA 194 1.62e-12 c.26.1.3 72254 1cozA 129 1.50e-11 c.26.1.2 31598 1ej2A 181 1.52e-11 c.26.1.3 59414 1nuuA 252 2.82e-11 c.26.1.3 86209 1mrzA 293 3.43e-11 b.43.5.1,c.26.1.3 91452,91453 1lw7A 365 5.36e-11 c.26.1.3,c.37.1.1 74295,74296 1m8jA 181 7.59e-11 c.26.1.3 84875 1kqnA 279 1.47e-10 c.26.1.3 77492 2qjoA 341 2.35e-10 2qjtA 352 4.52e-05 1n2eA 300 0.02477 c.26.1.4 85268 1v8fA 276 0.05272 c.26.1.4 100503 1v47A 349 0.05569 b.122.1.3,c.26.1.5 100292,100293 2a84A 300 0.07909 c.26.1.4 126389 1g8fA 511 0.08854 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1ihoA 283 0.1064 c.26.1.4 62390 2yxnA 322 1.220 1owlA 484 3.030 a.99.1.1,c.28.1.1 93647,93648 1r6xA 395 3.102 b.122.1.3,c.26.1.5 97167,97168 1rd5A 262 3.190 c.1.2.4 111772 1jhdA 396 4.943 b.122.1.3,c.26.1.5 66712,66713 1s0uA 408 5.631 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 4ts1A 319 5.658 c.26.1.1 31565 2cyaA 364 7.197 2z08A 137 7.979 1u3dA 509 9.809 a.99.1.1,c.28.1.1 107638,107639 1fkx 349 10.37 1j1uA 306 10.44 c.26.1.1 83980 1tezA 474 10.71 a.99.1.1,c.28.1.1 112409,112410 2gouA 365 10.88 2c3zA 222 11.26 1jmvA 141 11.83 c.26.2.4 66897 1w1iE 357 12.96 c.1.9.1 109051 2v9dA 343 14.89 2rfgA 297 15.75 1t5iA 172 17.35 c.37.1.19 106450 1zgdA 312 17.92 2nuwA 288 18.51 3d0cA 314 18.80 1a4mA 349 19.09 c.1.9.1 29014 2vc6A 292 19.17 1qnf 484 19.24 1lst 239 19.32 1wjgA 137 19.32 c.26.2.4 114696 1n3lA 372 21.32 c.26.1.1 79966 2r14A 377 21.79 2cybA 323 21.91 1f74A 293 21.92 c.1.10.1 29079 1hl2A 297 22.59 c.1.10.1 83581 1s3iA 310 24.41 b.46.1.1,c.65.1.1 98435,98436 2purA 292 25.36 1gqnA 252 25.68 c.1.10.1 90514 2ehhA 294 25.89 2pcqA 283 26.13 1icpA 376 26.45 c.1.4.1 62270 1wq3A 322 26.56 2ag6A 314 27.13 1wdnA 226 28.02 c.94.1.1 35816 1pe1A 267 28.51 c.1.10.4 94591 1vr6A 350 29.42 c.1.10.4 120439 1h1yA 228 29.67 c.1.2.2 76506 2db3A 434 29.77 1v1aA 309 29.80 c.72.1.1 100249 1qfeA 252 32.27 c.1.10.1 29167 1vypX 364 33.30 c.1.4.1 108905 1zhaA 267 33.53 2iswA 323 33.69 2r91A 286 33.87 2fliA 220 33.91 c.1.2.2 133714 2a6lA 292 34.04 c.1.10.1 126285 1bykA 255 35.50 c.93.1.1 35706 2nwrA 267 35.82 3ciwA 348 37.30 1dhpA 292 37.91 c.1.10.1 29097 3c8nA 356 39.12 2atsA 292 40.19 c.1.10.1 127306 1efvA 315 41.53 c.26.2.3,c.31.1.2 31633,31728 2a6nA 292 42.63 c.1.10.1 126289 2j07A 420 43.19 a.99.1.1,c.28.1.1 137891,137892 1oywA 523 43.57 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2qiwA 255 45.25 2dumA 170 45.27 2hmcA 344 45.49 1a53 247 45.89 1np7A 489 47.68 a.99.1.1,c.28.1.1 80677,80678 1y42X 392 48.35 1tq8A 163 49.33 c.26.2.4 107204 1jubA 311 50.26 c.1.4.1 90908 2i87A 364 52.29 1g67A 225 53.39 c.1.3.1 60311 1zp4A 304 55.72 2cycA 375 56.94 1ep3A 311 58.50 c.1.4.1 28597 1b5tA 275 58.93 c.1.23.1 29676 2bw0A 329 60.45 b.46.1.1,c.65.1.1 129303,129304 3c6cA 316 60.68 1yxyA 234 62.21 c.1.2.5 124203 1nsjA 205 65.49 c.1.2.4 28560 1tqjA 230 65.55 c.1.2.2 107228 1nal1 297 65.65 1ynpA 317 67.30 2q5cA 196 69.58 1dorA 311 72.24 c.1.4.1 28595 1ur3M 319 72.72 c.1.7.1 99806 2pfsA 150 73.55 1o60A 292 73.60 c.1.10.4 92532 2i4iA 417 74.21 2ojpA 292 74.82 2abbA 364 75.31 c.1.4.1 126517 3b4uA 294 76.37 1v5xA 203 76.68 c.1.2.4 100377 1xt8A 292 77.05 c.94.1.1 122293 1igs 248 77.12 1rhcA 330 77.36 c.1.16.3 97468 1vflA 356 80.56 c.1.9.1 120041 2pidA 356 81.72 1v6tA 255 82.19 c.6.2.5 113550 1w3iA 293 84.10 c.1.10.1 109152 1hlvA 131 85.21 a.4.1.7,a.4.1.7 65854,65855 1rvgA 305 85.94 c.1.10.2 97920 2v2gA 233 86.55 1lstA 239 87.06 c.94.1.1 35755