# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1qjcA 158 2.91e-13 c.26.1.3 63328 1od6A 160 4.14e-13 c.26.1.3 86836 1tfuA 157 9.98e-13 c.26.1.3 106859 1yumA 242 1.06e-12 1k4mA 213 1.53e-12 c.26.1.3 77258 2h29A 189 2.25e-12 1kamA 194 6.57e-12 c.26.1.3 72254 1f9aA 168 1.25e-11 c.26.1.3 31602 1cozA 129 1.31e-10 c.26.1.2 31598 1nuuA 252 2.34e-10 c.26.1.3 86209 1ej2A 181 2.35e-10 c.26.1.3 59414 1mrzA 293 5.22e-10 b.43.5.1,c.26.1.3 91452,91453 1m8jA 181 6.46e-10 c.26.1.3 84875 1lw7A 365 9.99e-10 c.26.1.3,c.37.1.1 74295,74296 1kqnA 279 1.56e-09 c.26.1.3 77492 2qjoA 341 8.97e-09 2qjtA 352 9.69e-05 1g8fA 511 0.04892 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2a84A 300 0.05595 c.26.1.4 126389 1n2eA 300 0.06128 c.26.1.4 85268 1v8fA 276 0.07505 c.26.1.4 100503 1v47A 349 0.1062 b.122.1.3,c.26.1.5 100292,100293 1ihoA 283 0.1110 c.26.1.4 62390 2cyaA 364 0.2246 1jhdA 396 1.297 b.122.1.3,c.26.1.5 66712,66713 1r6xA 395 1.442 b.122.1.3,c.26.1.5 97167,97168 1n3lA 372 1.505 c.26.1.1 79966 1j1uA 306 1.673 c.26.1.1 83980 2yxnA 322 2.259 2ip1A 432 2.665 2cybA 323 3.301 4ts1A 319 4.293 c.26.1.1 31565 1owlA 484 6.731 a.99.1.1,c.28.1.1 93647,93648 1wq3A 322 7.168 2z08A 137 7.465 1h3fA 432 7.572 c.26.1.1,d.66.1.4 76631,76632 1jmvA 141 8.111 c.26.2.4 66897 1tezA 474 8.112 a.99.1.1,c.28.1.1 112409,112410 1fkx 349 8.930 1xt8A 292 9.721 c.94.1.1 122293 1r6uA 437 10.20 c.26.1.1 97163 1wjgA 137 12.66 c.26.2.4 114696 1qmgA 524 12.98 a.100.1.2,c.2.1.6 18785,30182 2j5bA 348 13.45 1rd5A 262 13.82 c.1.2.4 111772 2vc6A 292 13.96 2r91A 286 16.07 2ojpA 292 16.95 1lst 239 17.42 2rfgA 297 19.10 1s3iA 310 19.61 b.46.1.1,c.65.1.1 98435,98436 2r8wA 332 20.24 1y42X 392 20.75 2purA 292 20.78 2ag6A 314 20.81 1jx6A 342 21.39 c.93.1.1 67406 2ehhA 294 22.33 2blnA 305 23.19 b.46.1.1,c.65.1.1 128734,128735 1hzpA 335 23.45 c.95.1.2,c.95.1.2 61455,61456 1o5kA 306 23.53 c.1.10.1 92504 2nuwA 288 23.87 1qnf 484 24.47 2v9dA 343 25.45 1s0uA 408 26.33 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 1a4mA 349 26.61 c.1.9.1 29014 2yzrA 330 27.56 1dhpA 292 27.68 c.1.10.1 29097 1oywA 523 28.80 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2atsA 292 29.51 c.1.10.1 127306 2a6nA 292 30.65 c.1.10.1 126289 1w3iA 293 30.82 c.1.10.1 109152 1f74A 293 31.62 c.1.10.1 29079 2a6lA 292 35.82 c.1.10.1 126285 2pidA 356 36.41 2v25A 259 36.49 1xkyA 301 38.31 c.1.10.1 122094 2gar 212 40.50 2gouA 365 42.24 2pcqA 283 42.42 2j07A 420 43.64 a.99.1.1,c.28.1.1 137891,137892 1jilA 420 45.18 c.26.1.1 66745 1uanA 227 45.31 c.134.1.1 99135 2bonA 332 48.31 1t5iA 172 51.91 c.37.1.19 106450 1mzjA 339 54.07 c.95.1.2,c.95.1.2 79700,79701 1ru8A 232 54.51 c.26.2.1 97849 1zgdA 312 55.41 1j0aA 325 55.54 c.79.1.1 83871 1v6tA 255 56.24 c.6.2.5 113550 1yi8A 351 56.45 3d0cA 314 56.97 1q6oA 216 59.07 c.1.2.3 95986 1h5yA 253 59.96 c.1.2.1 65638 2hmcA 344 60.02 1wdnA 226 61.39 c.94.1.1 35816 2i5eA 211 61.49 1yxyA 234 61.49 c.1.2.5 124203 2ts1 419 61.95 2j4dA 525 63.73 1mumA 295 63.92 c.1.12.7 85108 1d2rA 326 64.24 c.26.1.1 31572 1j9lA 247 64.36 c.106.1.1 62762 1p1xA 260 67.93 c.1.10.1 104060 1n7kA 234 69.59 c.1.10.1 85374 1u3dA 509 70.15 a.99.1.1,c.28.1.1 107638,107639 1mixA 206 70.75 a.11.2.1,b.55.1.5 79166,79167 1efvA 315 73.52 c.26.2.3,c.31.1.2 31633,31728 1h1yA 228 74.85 c.1.2.2 76506 2c3zA 222 78.26 1tqjA 230 79.18 c.1.2.2 107228 1qopA 268 80.76 c.1.2.4 28570 2c4nA 250 82.15 c.108.1.14 129837 2hcrA 326 82.92 1zejA 293 83.27 2a5hA 416 83.73 3b4uA 294 84.57 2db3A 434 86.66 1gggA 226 86.67 c.94.1.1 35817 2om6A 235 86.81 1nsjA 205 87.43 c.1.2.4 28560 2v3vA 723 89.56 1hnjA 317 89.59 c.95.1.2,c.95.1.2 35969,35970