# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1qjcA	158	7.24e-18	c.26.1.3	63328
1od6A	160	8.39e-18	c.26.1.3	86836
1yumA	242	3.45e-17		
1tfuA	157	4.23e-17	c.26.1.3	106859
1k4mA	213	7.60e-17	c.26.1.3	77258
1f9aA	168	2.23e-16	c.26.1.3	31602
2h29A	189	2.46e-16		
1kamA	194	3.39e-16	c.26.1.3	72254
1ej2A	181	3.15e-14	c.26.1.3	59414
1nuuA	252	5.85e-14	c.26.1.3	86209
1cozA	129	6.19e-14	c.26.1.2	31598
1m8jA	181	1.03e-13	c.26.1.3	84875
1mrzA	293	2.07e-13	b.43.5.1,c.26.1.3	91452,91453
1lw7A	365	2.47e-13	c.26.1.3,c.37.1.1	74295,74296
1kqnA	279	4.52e-13	c.26.1.3	77492
2qjoA	341	6.84e-12		
2qjtA	352	5.89e-06		
1n2eA	300	0.01720	c.26.1.4	85268
2a84A	300	0.01805	c.26.1.4	126389
1g8fA	511	0.02200	b.122.1.3,c.26.1.5,c.37.1.15	60348,60349,60350
1v8fA	276	0.03710	c.26.1.4	100503
1ihoA	283	0.06471	c.26.1.4	62390
1v47A	349	0.08735	b.122.1.3,c.26.1.5	100292,100293
2cyaA	364	0.08816		
1n3lA	372	0.2996	c.26.1.1	79966
2yxnA	322	0.8373		
4ts1A	319	0.8375	c.26.1.1	31565
1j1uA	306	1.177	c.26.1.1	83980
1jhdA	396	1.731	b.122.1.3,c.26.1.5	66712,66713
2cybA	323	2.088		
2ip1A	432	2.194		
1r6xA	395	3.115	b.122.1.3,c.26.1.5	97167,97168
1r6uA	437	4.058	c.26.1.1	97163
1xt8A	292	4.325	c.94.1.1	122293
1qmgA	524	6.696	a.100.1.2,c.2.1.6	18785,30182
1jmvA	141	9.054	c.26.2.4	66897
2z08A	137	9.152		
1wjgA	137	9.732	c.26.2.4	114696
2ts1	419	11.10		
1h3fA	432	11.56	c.26.1.1,d.66.1.4	76631,76632
1fkx	349	12.08		
1a4mA	349	12.50	c.1.9.1	29014
2pidA	356	12.53		
1s0uA	408	13.36	b.43.3.1,b.44.1.1,c.37.1.8	98302,98303,98304
1y42X	392	13.62		
2ojpA	292	15.62		
2j5bA	348	16.94		
2ag6A	314	17.31		
1hzpA	335	17.61	c.95.1.2,c.95.1.2	61455,61456
1jilA	420	17.70	c.26.1.1	66745
2yzrA	330	20.52		
1d2rA	326	20.89	c.26.1.1	31572
1lst	239	21.33		
1owlA	484	22.87	a.99.1.1,c.28.1.1	93647,93648
2purA	292	23.79		
1wq3A	322	24.67		
1j9lA	247	27.21	c.106.1.1	62762
1efvA	315	27.72	c.26.2.3,c.31.1.2	31633,31728
2vc6A	292	28.28		
2v25A	259	28.52		
2ehhA	294	29.33		
1oywA	523	31.03	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
2j07A	420	31.48	a.99.1.1,c.28.1.1	137891,137892
2rfgA	297	32.63		
1qnf	484	32.90		
1ru8A	232	32.90	c.26.2.1	97849
1tezA	474	33.20	a.99.1.1,c.28.1.1	112409,112410
1t5iA	172	34.20	c.37.1.19	106450
1xkyA	301	34.24	c.1.10.1	122094
1mixA	206	36.03	a.11.2.1,b.55.1.5	79166,79167
2v3vA	723	36.34		
1yi8A	351	36.94		
1yxyA	234	37.61	c.1.2.5	124203
2a6lA	292	37.64	c.1.10.1	126285
2gouA	365	38.00		
1jx6A	342	38.23	c.93.1.1	67406
2a5hA	416	40.64		
2atsA	292	40.84	c.1.10.1	127306
2napA	723	41.96	b.52.2.2,c.81.1.1	26926,35334
1rzmA	338	43.05	c.1.10.4	105137
2couA	109	44.01		
1i6lA	328	45.89	c.26.1.1	66041
1w1iE	357	46.67	c.1.9.1	109051
2a6nA	292	47.36	c.1.10.1	126289
2r8wA	332	47.71		
1s3iA	310	48.17	b.46.1.1,c.65.1.1	98435,98436
1tqjA	230	48.89	c.1.2.2	107228
2v9dA	343	49.92		
1tq8A	163	52.79	c.26.2.4	107204
1v6tA	255	53.84	c.6.2.5	113550
2gwgA	350	54.45	c.1.9.15	135805
1rd5A	262	54.89	c.1.2.4	111772
1mumA	295	55.06	c.1.12.7	85108
2ph0A	174	55.97		
2cycA	375	59.76		
1uanA	227	59.99	c.134.1.1	99135
1xbtA	193	60.23	c.37.1.24,g.39.1.14	115080,115081
1o5kA	306	63.75	c.1.10.1	92504
2db3A	434	65.74		
4kbpA	432	67.63	b.1.12.1,d.159.1.1	22345,42064
1ekeA	230	70.03	c.55.3.1	33572
2q0sA	216	70.84		
3bl6A	230	70.98		
2c4nA	250	71.34	c.108.1.14	129837
2q88A	257	73.00		
2dumA	170	73.89		
2pljA	419	77.49		
1w3iA	293	79.17	c.1.10.1	109152
1vkhA	273	81.22	c.69.1.32	108662
2c3zA	222	81.29		
2r91A	286	83.57		
1ir6A	424	84.61	c.107.1.2	71342